RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Csa_5G587210	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	2747 bases	Strand	Minus strand
Position	5 : 21041803 - 21044549	RNA binding domain	Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KGN51650	Lactamase_B	PF00753	3.7e-21	1
KGN51650	Beta-Casp	PF10996	1.3e-27	2
KGN51650	CPSF73-100_C	PF11718	2.8e-16	3
KGN51650	RMMBL	PF07521	7.9e-15	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KGN51650	1641	546aa	KGN51650

Gene Model

Click here to download Csa_5G587210's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Csa_5G587210's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa_5G587210

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa_5G587210

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression