RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Csa_5G587170	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	3344 bases	Strand	Minus strand
Position	5 : 21027081 - 21030424	RNA binding domain	Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KGN51646	Lactamase_B	PF00753	1.1e-17	1
KGN51646	Beta-Casp	PF10996	6.4e-27	2
KGN51646	CPSF73-100_C	PF11718	1e-45	3
KGN51646	RMMBL	PF07521	9.7e-15	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KGN51646	2049	682aa	KGN51646

Gene Model

Click here to download Csa_5G587170's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Csa_5G587170's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa_5G587170

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa_5G587170

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression