RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Csa10g012760	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Pre-mRNA cleavage factor Im 25 kDa subunit 1
Status	Confidence	Length	1612 bases	Strand	Plus strand
Position	10 : 5278131 - 5279742	RNA binding domain	NUDIX_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Csa10g012760	NUDIX_2	PF13869	2.9e-73	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Csa10g012760.1	1001	223aa	Csa10g012760.1

Gene Model

Click here to download Csa10g012760's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Csa10g012760's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa10g012760

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa10g012760

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression