Description

Ensembl ID Csa01176s010 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 6965 bases Strand Plus strand
Position unpScaffold01176 : 1 - 6965 RNA binding domain PROCT , PRP8_domainIV , U6-snRNA_bdg , RRM_4 , U5_2-snRNA_bdg
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Csa01176s010 PROCT PF08084 2.3e-51 1
Csa01176s010 PROCT PF08084 2.4e-51 2
Csa01176s010 PRP8_domainIV PF12134 5.1e-129 3
Csa01176s010 PRP8_domainIV PF12134 5.4e-129 4
Csa01176s010 U6-snRNA_bdg PF10596 4.3e-90 5
Csa01176s010 U6-snRNA_bdg PF10596 4.5e-90 6
Csa01176s010 RRM_4 PF10598 1.9e-40 7
Csa01176s010 RRM_4 PF10598 2.3e-40 8
Csa01176s010 U5_2-snRNA_bdg PF10597 1.5e-71 9
Csa01176s010 U5_2-snRNA_bdg PF10597 1.5e-71 10

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Csa01176s010.1 4625 1442aa Csa01176s010.1
- Csa01176s010.2 4559 1420aa Csa01176s010.2

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Csa01176s010

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Csa01176s010

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression