RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Csa00583s020	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2051 bases	Strand	Minus strand
Position	unpScaffold00583 : 2660 - 4710	RNA binding domain	PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Csa00583s020	PPR	PF01535	4.1e-10	1
Csa00583s020	PPR	PF01535	4.1e-10	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Csa00583s020.1	1461	422aa	Csa00583s020.1

Gene Model

Click here to download Csa00583s020's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Csa00583s020's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa00583s020

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Csa00583s020

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression