RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Cav04g12220	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3105 bases	Strand	Minus strand
Position	ca4 : 23276926 - 23280030	RNA binding domain	Ribosomal_S3Ae
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Cav04g12220	Ribosomal_S3Ae	PF01015	4.3e-76	1
Cav04g12220	Ribosomal_S3Ae	PF01015	4.3e-76	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Cav04g12220.t1	1233	324aa	Cav04g12220.t1

Gene Model

Click here to download Cav04g12220's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Cav04g12220's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Cav04g12220

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Cav04g12220

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression