Description

Ensembl ID Cav03g06250 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 12527 bases Strand Minus strand
Position ca3 : 5665301 - 5677827 RNA binding domain ResIII , DEAD , Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Cav03g06250 ResIII PF04851 9.6e-09 1
Cav03g06250 DEAD PF00270 2.8e-10 2
Cav03g06250 Ribonucleas_3_3 PF14622 4.6e-21 3
Cav03g06250 PAZ PF02170 6.6e-16 4
Cav03g06250 Dicer_dimer PF03368 6.1e-15 5
Cav03g06250 Ribonuclease_3 PF00636 2.2e-47 6
Cav03g06250 Ribonuclease_3 PF00636 2.2e-47 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Cav03g06250.t1 4422 1418aa Cav03g06250.t1

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Cav03g06250

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Cav03g06250

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression