RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Cav02g10730	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	16338 bases	Strand	Minus strand
Position	ca2 : 10897456 - 10913793	RNA binding domain	Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Cav02g10730	Ribonucleas_3_3	PF14622	3.6e-22	1
Cav02g10730	PAZ	PF02170	9.6e-15	2
Cav02g10730	Dicer_dimer	PF03368	3.5e-15	3
Cav02g10730	Ribonuclease_3	PF00636	1.9e-46	4
Cav02g10730	Ribonuclease_3	PF00636	1.9e-46	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Cav02g10730.t1	5500	1696aa	Cav02g10730.t1

Gene Model

Click here to download Cav02g10730's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Cav02g10730's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Cav02g10730

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Cav02g10730

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression