RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	CICLE_v10019242mg	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	8830 bases	Strand	Minus strand
Position	KI536661 : 41824814 - 41833643	RNA binding domain	RNase_PH , RNase_PH_C , KH_1 , S1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ESR56746	RNase_PH	PF01138	1.6e-22	1
ESR56746	RNase_PH_C	PF03725	2.9e-06	2
ESR56746	KH_1	PF00013	2.9e-06	3
ESR56746	S1	PF00575	9.9e-13	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ESR56746	3001	645aa	ESR56746

Gene Model

Click here to download CICLE_v10019242mg's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download CICLE_v10019242mg's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CICLE_v10019242mg

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CICLE_v10019242mg

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression