RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	CICLE_v10014159mg	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	9483 bases	Strand	Plus strand
Position	KI536312 : 9471061 - 9480543	RNA binding domain	RNase_PH , RNase_PH_C , PNPase , S1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ESR59792	RNase_PH	PF01138	1.3e-44	1
ESR59792	RNase_PH	PF01138	1.3e-44	2
ESR59792	RNase_PH_C	PF03725	2.4e-18	3
ESR59792	PNPase	PF03726	2.4e-17	4
ESR59792	S1	PF00575	5.3e-14	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ESR59792	3210	973aa	ESR59792

Gene Model

Click here to download CICLE_v10014159mg's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download CICLE_v10014159mg's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CICLE_v10014159mg

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CICLE_v10014159mg

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression