Description

Ensembl ID CEY00_Acc33231 Gene ID Accession -
Symbol Alias - Full Name TRNA pseudouridine synthase
Status Confidence Length 3745 bases Strand Minus strand
Position LG29 : 14057628 - 14061372 RNA binding domain PseudoU_synth_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PSR85245 PseudoU_synth_1 PF01416 1e-36 1
PSR85245 PseudoU_synth_1 PF01416 1e-36 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PSR85245 1660 337aa PSR85245

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc33231actinidia_chinensisPSS1417822.97313.3205actinidia_chinensisPSR8524535.311620.4748
CEY00_Acc33231actinidia_chinensisPSS1983617.774111.2957actinidia_chinensisPSR8524531.750720.178
CEY00_Acc33231actinidia_chinensisPSS0953422.456813.0518actinidia_chinensisPSR8524534.718120.178
CEY00_Acc33231actinidia_chinensisPSS0002529.438220actinidia_chinensisPSR8524538.872426.4095
CEY00_Acc33231actinidia_chinensisPSS1798520.300812.0301actinidia_chinensisPSR852458.011874.74777
CEY00_Acc33231actinidia_chinensisPSS2914933.769619.8953actinidia_chinensisPSR8524538.278922.5519
CEY00_Acc33231actinidia_chinensisPSR8522922.362915.1899actinidia_chinensisPSR8524531.45421.365

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc33231actinidia_chinensisPSR8524544.213629.6736chondrus_crispusCDF3877043.567329.2398
CEY00_Acc33231actinidia_chinensisPSR8524539.169126.1128chlamydomonas_reinhardtiiPNW7918124.399316.2662
CEY00_Acc33231actinidia_chinensisPSR8524536.201823.1454chlamydomonas_reinhardtiiPNW7425721.903114.0036
CEY00_Acc33231actinidia_chinensisPSR8524573.887263.5015papaver_somniferumRZC4879674.774864.2643
CEY00_Acc33231actinidia_chinensisPSR8524576.557965.8754ficus_caricaFCD_00031552-RA:cds81.132169.8113
CEY00_Acc33231actinidia_chinensisPSR8524578.338366.1721cannabis_sativa_femalecds.novel_model_6890_5bd9a17a.4.5bd9b13d79.758367.3716
CEY00_Acc33231actinidia_chinensisPSR8524573.590562.0178beta_vulgarisKMS9862677.258665.109
CEY00_Acc33231actinidia_chinensisPSR8524576.557963.7982citrullus_lanatusCla97C06G113590.177.245564.3713
CEY00_Acc33231actinidia_chinensisPSR8524558.45748.368cucumis_meloMELO3C021228.2.177.865664.4269
CEY00_Acc33231actinidia_chinensisPSR8524574.18460.5341cucumis_sativusKGN4562774.850361.0778
CEY00_Acc33231actinidia_chinensisPSR8524572.99762.6113arabidopsis_thalianaAT3G06950.176.16165.3251
CEY00_Acc33231actinidia_chinensisPSR8524577.151367.0623populus_trichocarpaPotri.008G206200.1.v4.176.923166.8639
CEY00_Acc33231actinidia_chinensisPSR8524575.964464.095brassica_junceacds.BjuB03g39120S64.974654.8223
CEY00_Acc33231actinidia_chinensisPSR8524575.964463.2047brassica_junceacds.BjuA03g28340S74.418661.9186
CEY00_Acc33231actinidia_chinensisPSR8524575.964462.6113brassica_napusCDX7407179.503165.528
CEY00_Acc33231actinidia_chinensisPSR8524575.964463.2047brassica_napusCDY0802479.503166.1491
CEY00_Acc33231actinidia_chinensisPSR8524556.973341.543marchantia_polymorphaPTQ2726952.316138.1471
CEY00_Acc33231actinidia_chinensisPSR8524577.744868.546prunus_dulcisVVA3538179.635370.2128
CEY00_Acc33231actinidia_chinensisPSR8524576.261165.8754malus_domestica_goldenmRNA:MD13G012530077.177266.6667
CEY00_Acc33231actinidia_chinensisPSR8524571.216660.2374malus_domestica_goldenmRNA:MD16G012050078.175966.1238
CEY00_Acc33231actinidia_chinensisPSR8524577.744868.8427prunus_persicaONI2778679.635370.5167
CEY00_Acc33231actinidia_chinensisPSR8524575.074265.8754cajanus_cajanC.cajan_03930.t89.084578.169
CEY00_Acc33231actinidia_chinensisPSR8524577.151365.8754medicago_truncatulaAES9207680.745368.9441
CEY00_Acc33231actinidia_chinensisPSR8524578.041567.359lupinus_angustifoliusOIV9540382.187570.9375
CEY00_Acc33231actinidia_chinensisPSR8524576.261163.5015pisum_sativumPsat4g021160.1.cds80.564367.0846
CEY00_Acc33231actinidia_chinensisPSR8524578.041567.0623glycine_maxKRH1948980.428169.1132
CEY00_Acc33231actinidia_chinensisPSR8524577.151366.1721glycine_maxKRH0247774.285763.7143
CEY00_Acc33231actinidia_chinensisPSR8524578.041567.0623phaseolus_vulgarisESW2647181.67770.1863
CEY00_Acc33231actinidia_chinensisPSR8524577.448167.9525vigna_radiataVradi07g24050.180.80570.8978
CEY00_Acc33231actinidia_chinensisPSR8524575.074263.5015capsicum_annuumPHT8222778.328266.2539
CEY00_Acc33231actinidia_chinensisPSR8524575.964466.4688manihot_esculentaOAY5622978.048868.2927
CEY00_Acc33231actinidia_chinensisPSR8524577.744867.6558vigna_unguiculataVigun03g406900.1.v1.281.366570.8075
CEY00_Acc33231actinidia_chinensisPSR8524575.667764.3917solanum_tuberosumPGSC0003DMT40006995777.981766.3609
CEY00_Acc33231actinidia_chinensisPSR8524529.080124.6291helianthus_annuusmRNA:HanXRQr2_Chr10g041912165.771855.7047
CEY00_Acc33231actinidia_chinensisPSR8524570.919961.4243helianthus_annuusmRNA:HanXRQr2_Chr10g043117178.360767.8689
CEY00_Acc33231actinidia_chinensisPSR8524575.667764.3917solanum_lycopersicumSolyc05g053190.3.177.981766.3609
CEY00_Acc33231actinidia_chinensisPSR8524571.810162.3145lactuca_sativacds-PLY85101.177.564167.3077
CEY00_Acc33231actinidia_chinensisPSR8524532.344228.1899oryza_longistaminataKN543230.1_FGP00177.857167.8571
CEY00_Acc33231actinidia_chinensisPSR8524573.887262.6113oryza_brachyanthaOB05G18450.168.032857.6503
CEY00_Acc33231actinidia_chinensisPSR8524570.623156.9733avena_sativa_sangAVESA.00010b.r2.1AG0071510.1.CDS46.213637.2816
CEY00_Acc33231actinidia_chinensisPSR8524569.436256.3798avena_sativa_sangAVESA.00010b.r2.1DG0190570.1.CDS68.823555.8824
CEY00_Acc33231actinidia_chinensisPSR8524552.522343.9169lolium_perennecds.KYUSt_chr1.862356.190546.9841
CEY00_Acc33231actinidia_chinensisPSR8524572.403662.6113oryza_glaberrimaORGLA05G0085600.171.34561.6959
CEY00_Acc33231actinidia_chinensisPSR8524571.810161.1276setaria_italicaKQL2959667.977557.8652
CEY00_Acc33231actinidia_chinensisPSR8524570.623160.2374secale_cerealeSECCE1Rv1G0022100.171.686761.1446
CEY00_Acc33231actinidia_chinensisPSR8524571.810161.7211oryza_punctataOPUNC05G08590.167.597858.1006
CEY00_Acc33231actinidia_chinensisPSR8524572.700362.6113oryza_rufipogonORUFI05G10640.271.637461.6959
CEY00_Acc33231actinidia_chinensisPSR8524573.293862.6113setaria_viridisTKW3912374.174263.3634
CEY00_Acc33231actinidia_chinensisPSR8524571.513460.5341triticum_urartuTuG1812G0100001451.01.T0172.590461.4458
CEY00_Acc33231actinidia_chinensisPSR8524559.940743.6202physcomitrium_patensPp3c21_5420V3.158.720942.7326
CEY00_Acc33231actinidia_chinensisPSR8524578.041565.8754ananas_comosusAco022112.1.mrna174.293862.7119
CEY00_Acc33231actinidia_chinensisPSR8524571.513460.5341triticum_aestivumTraesCS1D02G124100.272.590461.4458
CEY00_Acc33231actinidia_chinensisPSR8524571.513460.5341triticum_aestivumTraesCS1A02G134500.372.590461.4458
CEY00_Acc33231actinidia_chinensisPSR8524571.216659.9407triticum_aestivumTraesCS1B02G152500.272.289260.8434
CEY00_Acc33231actinidia_chinensisPSR8524572.106861.1276sorghum_bicolorOQU8521570.434859.7101
CEY00_Acc33231actinidia_chinensisPSR8524569.732959.0504zea_maysZm00001eb245280_P00167.919157.5145
CEY00_Acc33231actinidia_chinensisPSR8524570.326460.8309asparagus_officinalisONK6311172.699462.8834
CEY00_Acc33231actinidia_chinensisPSR8524570.326457.27avena_sativa_ot3098cds.AVESA.00001b.r3.1Cg0000692.262.368450.7895
CEY00_Acc33231actinidia_chinensisPSR8524570.029756.9733avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0000253.166.855554.3909
CEY00_Acc33231actinidia_chinensisPSR8524570.623156.9733avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0000309.167.422154.3909
CEY00_Acc33231actinidia_chinensisPSR8524569.436257.8635amborella_trichopodaERN0201575.483962.9032
CEY00_Acc33231actinidia_chinensisPSR8524578.931770.3264corylus_avellanaCav05g00520.t165.036757.9462
CEY00_Acc33231actinidia_chinensisPSR8524579.228570.0297gossypium_raimondiiKJB2885779.701570.4478
CEY00_Acc33231actinidia_chinensisPSR8524581.602474.7775vitis_viniferaVitvi05g00258_P00181.845275
CEY00_Acc33231actinidia_chinensisPSR8524575.667764.9852ipomoea_trilobaitb13g20770.t276.807265.9639
CEY00_Acc33231actinidia_chinensisPSR8524571.216659.9407triticum_turgidumTRITD1Bv1G081390.572.289260.8434
CEY00_Acc33231actinidia_chinensisPSR8524571.513460.5341triticum_turgidumTRITD1Av1G075040.472.590461.4458
CEY00_Acc33231actinidia_chinensisPSR8524572.700362.3145eragrostis_curvulaTVU3021969.405159.4901
CEY00_Acc33231actinidia_chinensisPSR8524572.99762.908oryza_glumipatulaOGLUM05G10210.167.955858.5635
CEY00_Acc33231actinidia_chinensisPSR8524572.700362.908prunus_aviumPav_sc0000065.1_g230.1.mk:mrna68.055658.8889
CEY00_Acc33231actinidia_chinensisPSR8524574.18464.3917coffea_canephoraCDO9868972.674463.0814
CEY00_Acc33231actinidia_chinensisPSR8524569.732959.0504brachypodium_distachyonKQJ9678270.570659.7598
CEY00_Acc33231actinidia_chinensisPSR8524574.18463.5015arabis_alpinaKFK3808377.399466.2539
CEY00_Acc33231actinidia_chinensisPSR8524576.261168.2493fraxinus_excelsiorFRAEX38873_v2_000028750.3.cds76.261168.2493
CEY00_Acc33231actinidia_chinensisPSR8524572.700363.2047oryza_meridionalisOMERI05G08620.171.637462.2807
CEY00_Acc33231actinidia_chinensisPSR8524545.103927.5964oryza_indicaBGIOSGA040070-PA37.254922.7941
CEY00_Acc33231actinidia_chinensisPSR8524581.305674.184pistacia_veracds-EVM0013244.183.030375.7576
CEY00_Acc33231actinidia_chinensisPSR8524580.415474.184quercus_subercds-POE69361.178.09872.0461
CEY00_Acc33231actinidia_chinensisPSR8524551.335344.8071cynara_cardunculusKVH9974673.305163.9831
CEY00_Acc33231actinidia_chinensisPSR8524569.139562.0178cynara_cardunculusKVH9973369.552262.3881
CEY00_Acc33231actinidia_chinensisPSR8524566.172158.7537cynara_cardunculusKVH9974176.632368.0412
CEY00_Acc33231actinidia_chinensisPSR8524582.195873.2938juglans_regiacds.Jr07_12790_p181.470672.6471
CEY00_Acc33231actinidia_chinensisPSR8524582.492673.2938juglans_regiacds.Jr07_12780_p181.524972.434
CEY00_Acc33231actinidia_chinensisPSR8524545.400637.3887arabidopsis_hallerig06499.t171.495358.8785
CEY00_Acc33231actinidia_chinensisPSR8524574.18463.2047arabidopsis_hallerig06505.t177.399465.9443
CEY00_Acc33231actinidia_chinensisPSR8524574.480762.908eutrema_salsugineumESQ4934077.950365.8385
CEY00_Acc33231actinidia_chinensisPSR8524553.412537.092chara_brauniiGBG6604222.415915.5666
CEY00_Acc33231actinidia_chinensisPSR8524573.590562.908chenopodium_quinoaAUR62002543-RA:cds73.809563.0952
CEY00_Acc33231actinidia_chinensisPSR8524578.041566.4688eucalyptus_grandisKCW8750881.931569.7819
CEY00_Acc33231actinidia_chinensisPSR8524576.854665.5786rosa_chinensisPRQ3965979.447967.7914
CEY00_Acc33231actinidia_chinensisPSR8524569.436259.3472leersia_perrieriLPERR05G07980.268.221658.309
CEY00_Acc33231actinidia_chinensisPSR8524572.700362.6113oryza_barthiiOBART05G09880.171.637461.6959
CEY00_Acc33231actinidia_chinensisPSR8524554.302739.7626selaginella_moellendorffiiEFJ3302668.029749.8141
CEY00_Acc33231actinidia_chinensisPSR8524554.302740.0593selaginella_moellendorffiiEFJ3585168.283650.3731
CEY00_Acc33231actinidia_chinensisPSR8524575.370963.5015daucus_carotaKZM8627769.209858.3106
CEY00_Acc33231actinidia_chinensisPSR8524577.448159.0504kalanchoe_fedtschenkoiKaladp0351s0025.1.v1.178.378459.7598
CEY00_Acc33231actinidia_chinensisPSR8524545.400629.6736cyanidioschyzon_merolaeCMQ041CT36.084923.5849
CEY00_Acc33231actinidia_chinensisPSR8524569.732959.0504saccharum_spontaneumSspon.04G0032500-1C-mRNA-1:cds69.321558.7021
CEY00_Acc33231actinidia_chinensisPSR8524567.952557.5668triticum_dicoccoidesTRIDC1AG018860.272.239761.1987
CEY00_Acc33231actinidia_chinensisPSR8524563.798254.8961triticum_dicoccoidesTRIDC1BG024350.365.950956.7485
CEY00_Acc33231actinidia_chinensisPSR8524546.587533.5312ostreococcus_lucimarinusABP0070754.895139.5105
CEY00_Acc33231actinidia_chinensisPSR8524579.228567.6558corymbia_citriodoracds-KAF8039439.182.153870.1538
CEY00_Acc33231actinidia_chinensisPSR8524571.216659.0504echinochloa_crusgalliscaffold80.357.cds46.966738.9432
CEY00_Acc33231actinidia_chinensisPSR8524573.590562.6113eragrostis_tefEt_1B_010733.CDS63.917554.3814
CEY00_Acc33231actinidia_chinensisPSR8524562.314555.1929eragrostis_tefEt_1A_005847.CDS75.268866.6667
CEY00_Acc33231actinidia_chinensisPSR8524553.115743.6202digitaria_exilisDexi5A01G0035040.1:cds71.314758.5657
CEY00_Acc33231actinidia_chinensisPSR8524568.54659.0504digitaria_exilisDexi5B01G0035060.1:cds73.566963.3758
CEY00_Acc33231actinidia_chinensisPSR8524571.810161.1276camelina_sativaCsa15g008620.181.208169.1275
CEY00_Acc33231actinidia_chinensisPSR8524570.029760.5341camelina_sativaCsa01g007940.179.194668.4564
CEY00_Acc33231actinidia_chinensisPSR8524570.623161.1276camelina_sativaCsa19g010650.179.865869.1275
CEY00_Acc33231actinidia_chinensisPSR8524547.477728.4866galdieria_sulphurariaEME2884048.632229.1793
CEY00_Acc33231actinidia_chinensisPSR8524574.18465.2819corchorus_capsularisOMO5338480.906271.1974
CEY00_Acc33231actinidia_chinensisPSR8524581.899175.6677quercus_lobataQL06p014362:mrna79.768873.6994
CEY00_Acc33231actinidia_chinensisPSR8524552.225543.3234arabidopsis_lyratascaffold_15900006.172.131159.8361
CEY00_Acc33231actinidia_chinensisPSR8524573.293862.908arabidopsis_lyratafgenesh2_kg.3__716__AT3G06950.176.470665.6347
CEY00_Acc33231actinidia_chinensisPSR8524581.305672.4036citrus_clementinaESR3245678.062769.5157
CEY00_Acc33231actinidia_chinensisPSR8524559.050449.8516brassica_rapa_ro18A03p037120.1_BraROA.179.667.2
CEY00_Acc33231actinidia_chinensisPSR8524570.326459.9407hordeum_vulgareHORVU.MOREX.r3.1HG0033590.172.256161.5854
CEY00_Acc33231actinidia_chinensisPSR8524576.854667.9525olea_europaeaOE9A080939C277.313468.3582
CEY00_Acc33231actinidia_chinensisPSR8524576.557968.2493olea_europaeaOE9A080972C277.014968.6567
CEY00_Acc33231actinidia_chinensisPSR8524571.513460.5341aegilops_tauschiiAET1Gv20324800.372.590461.4458
CEY00_Acc33231actinidia_chinensisPSR8524575.964463.2047brassica_oleraceaBo3g060930.174.418661.9186
CEY00_Acc33231actinidia_chinensisPSR8524572.99762.0178nymphaea_colorataNC10G0165950.1:cds67.582457.4176
CEY00_Acc33231actinidia_chinensisPSR8524574.480766.1721musa_acuminataMa11_p04520.176.993968.4049
CEY00_Acc33231actinidia_chinensisPSR8524577.448167.6558vigna_angularisKOM3336281.055970.8075
CEY00_Acc33231actinidia_chinensisPSR8524578.931770.9199theobroma_cacaoEOY0692982.608774.2236
CEY00_Acc33231actinidia_chinensisPSR8524573.293863.2047oryza_nivaraONIVA05G10170.367.857158.5165
CEY00_Acc33231actinidia_chinensisPSR8524577.448166.1721trifolium_pratenseTp57577_TGAC_v2_mRNA1295080.061368.4049
CEY00_Acc33231actinidia_chinensisPSR8524541.246334.4214dioscorea_rotundataDRNTG_18083.186.87572.5

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression