Description

Ensembl ID CEY00_Acc23992 Gene ID Accession -
Symbol Alias - Full Name TRNA pseudouridine(38/39) synthase
Status Confidence Length 11979 bases Strand Minus strand
Position LG21 : 7151643 - 7163621 RNA binding domain PseudoU_synth_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PSS00025 PseudoU_synth_1 PF01416 2.8e-31 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PSS00025 1495 445aa PSS00025

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc23992actinidia_chinensisPSS1417826.447916.2162actinidia_chinensisPSS0002530.786518.8764
CEY00_Acc23992actinidia_chinensisPSS1983624.584714.6179actinidia_chinensisPSS0002533.258419.7753
CEY00_Acc23992actinidia_chinensisPSS0953426.103615.9309actinidia_chinensisPSS0002530.561818.6517
CEY00_Acc23992actinidia_chinensisPSS1798532.330818.0451actinidia_chinensisPSS000259.662925.39326
CEY00_Acc23992actinidia_chinensisPSR8524538.872426.4095actinidia_chinensisPSS0002529.438220
CEY00_Acc23992actinidia_chinensisPSS2914931.151818.0628actinidia_chinensisPSS0002526.741615.5056
CEY00_Acc23992actinidia_chinensisPSR8522925.105514.135actinidia_chinensisPSS0002526.741615.0562

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc23992actinidia_chinensisPSS0002548.988832.3596chondrus_crispusCDF3559841.923127.6923
CEY00_Acc23992actinidia_chinensisPSS0002552.359636.8539chlamydomonas_reinhardtiiPNW8642642.752330.0917
CEY00_Acc23992actinidia_chinensisPSS0002550.112438.6517papaver_somniferumRZC5527565.395950.4399
CEY00_Acc23992actinidia_chinensisPSS0002566.741653.7079ficus_caricaFCD_00026075-RA:cds73.152758.867
CEY00_Acc23992actinidia_chinensisPSS0002573.932656.1798cannabis_sativa_femalecds.evm.model.01.183674.603256.6893
CEY00_Acc23992actinidia_chinensisPSS0002570.337157.7528beta_vulgarisKMT1939770.179457.6233
CEY00_Acc23992actinidia_chinensisPSS0002570.561856.6292citrullus_lanatusCla97C08G149850.168.859655.2632
CEY00_Acc23992actinidia_chinensisPSS0002569.438255.5056cucumis_meloMELO3C019957.2.167.912154.2857
CEY00_Acc23992actinidia_chinensisPSS0002570.112456.8539cucumis_sativusKGN4609754.736844.386
CEY00_Acc23992actinidia_chinensisPSS0002565.842751.236arabidopsis_thalianaAT1G34150.165.695151.1211
CEY00_Acc23992actinidia_chinensisPSS0002573.258462.0225populus_trichocarpaPotri.002G061650.1.v4.173.094261.8834
CEY00_Acc23992actinidia_chinensisPSS0002565.61851.9101brassica_napusCDX9372668.384154.0984
CEY00_Acc23992actinidia_chinensisPSS0002565.61851.236brassica_napusCDY1531768.065353.1469
CEY00_Acc23992actinidia_chinensisPSS0002559.325844.4944marchantia_polymorphaPTQ2953349.53137.1482
CEY00_Acc23992actinidia_chinensisPSS0002574.38262.0225prunus_dulcisVVA3954074.38262.0225
CEY00_Acc23992actinidia_chinensisPSS0002572.359660.2247malus_domestica_goldenmRNA:MD05G003020073.348561.0478
CEY00_Acc23992actinidia_chinensisPSS0002574.606762.2472prunus_persicaONH9029074.606762.2472
CEY00_Acc23992actinidia_chinensisPSS0002559.550651.4607cajanus_cajanC.cajan_26128.t78.402467.7515
CEY00_Acc23992actinidia_chinensisPSS0002566.741653.4831medicago_truncatulaKEH4361568.275954.7126
CEY00_Acc23992actinidia_chinensisPSS0002534.157328.764lupinus_angustifoliusOIW0657665.517255.1724
CEY00_Acc23992actinidia_chinensisPSS0002552.359642.9213pisum_sativumPsat6g189760.1.cds77.152363.245
CEY00_Acc23992actinidia_chinensisPSS0002573.258460.6742glycine_maxKRH3503576.525863.3803
CEY00_Acc23992actinidia_chinensisPSS0002571.910160.4494glycine_maxKRG9173275.117463.1455
CEY00_Acc23992actinidia_chinensisPSS0002570.337159.5506phaseolus_vulgarisESW1559473.302162.0609
CEY00_Acc23992actinidia_chinensisPSS0002570.786559.7753vigna_radiataVradi08g17580.170.627859.6413
CEY00_Acc23992actinidia_chinensisPSS0002572.584361.3483capsicum_annuumPHT8407477.272765.311
CEY00_Acc23992actinidia_chinensisPSS0002572.584360.8989manihot_esculentaOAY5853974.252962.2989
CEY00_Acc23992actinidia_chinensisPSS0002571.23660vigna_unguiculataVigun07g211400.1.v1.274.238962.5293
CEY00_Acc23992actinidia_chinensisPSS0002573.932663.1461solanum_tuberosumPGSC0003DMT40008001378.333366.9048
CEY00_Acc23992actinidia_chinensisPSS0002559.101152.1348sesamum_indicumSIN_1015784.t83.227973.4177
CEY00_Acc23992actinidia_chinensisPSS0002575.280962.4719helianthus_annuusmRNA:HanXRQr2_Chr04g015839174.444461.7778
CEY00_Acc23992actinidia_chinensisPSS0002527.640422.9213solanum_lycopersicumSolyc04g072140.3.161.19450.7463
CEY00_Acc23992actinidia_chinensisPSS0002542.921337.3034solanum_lycopersicumSolyc04g072145.1.183.043572.1739
CEY00_Acc23992actinidia_chinensisPSS0002575.730362.2472lactuca_sativacds-PLY78104.160.940350.0904
CEY00_Acc23992actinidia_chinensisPSS0002559.101145.1685oryza_longistaminataKN540322.1_FGP00966.246850.6297
CEY00_Acc23992actinidia_chinensisPSS0002566.067452.3596oryza_brachyanthaOB03G28750.168.691654.4393
CEY00_Acc23992actinidia_chinensisPSS0002567.19150.5618avena_sativa_sangAVESA.00010b.r2.4CG1313910.1.CDS66.444450
CEY00_Acc23992actinidia_chinensisPSS0002566.067450.5618avena_sativa_sangAVESA.00010b.r2.5DG0997610.1.CDS62.95548.1799
CEY00_Acc23992actinidia_chinensisPSS0002565.842750.3371avena_sativa_sangAVESA.00010b.r2.5AG0810390.1.CDS62.875548.0687
CEY00_Acc23992actinidia_chinensisPSS0002549.213536.6292oryza_glaberrimaORGLA03G0183400.162.039746.1756
CEY00_Acc23992actinidia_chinensisPSS0002567.865252.5843setaria_italicaKQK9064864.529950
CEY00_Acc23992actinidia_chinensisPSS0002567.19152.3596secale_cerealeSECCE3Rv1G0158730.164.439750.2155
CEY00_Acc23992actinidia_chinensisPSS0002560.449447.6404oryza_punctataOPUNC03G18410.169.151754.4987
CEY00_Acc23992actinidia_chinensisPSS0002564.494449.4382oryza_rufipogonORUFI03G20130.168.009552.1327
CEY00_Acc23992actinidia_chinensisPSS0002567.865252.5843setaria_viridisTKV9584160.52146.8938
CEY00_Acc23992actinidia_chinensisPSS0002531.910126.2921triticum_urartuTuG1812G0300001017.01.T0172.081259.3909
CEY00_Acc23992actinidia_chinensisPSS0002565.842751.236triticum_urartuTuG1812S0000157000.01.T0163.282949.2441
CEY00_Acc23992actinidia_chinensisPSS0002559.325842.2472physcomitrium_patensPp3c9_3740V3.148.979634.8794
CEY00_Acc23992actinidia_chinensisPSS0002565.61850.3371ananas_comosusAco009596.1.mrna155.40842.5047
CEY00_Acc23992actinidia_chinensisPSS0002566.516951.236triticum_aestivumTraesCS3D02G091500.163.930949.2441
CEY00_Acc23992actinidia_chinensisPSS0002565.842751.236triticum_aestivumTraesCS3A02G091600.263.282949.2441
CEY00_Acc23992actinidia_chinensisPSS0002565.842751.0112sorghum_bicolorEER9478063.834449.4553
CEY00_Acc23992actinidia_chinensisPSS0002566.067450.3371zea_maysZm00001eb018490_P00164.332649.0153
CEY00_Acc23992actinidia_chinensisPSS0002570.112454.8315asparagus_officinalisONK6523567.532552.8139
CEY00_Acc23992actinidia_chinensisPSS0002541.348324.7191caenorhabditis_elegansE02H1.3.145.771127.3632
CEY00_Acc23992actinidia_chinensisPSS0002535.280924.7191avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0002857.257.933640.5904
CEY00_Acc23992actinidia_chinensisPSS0002565.842750.3371avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0000878.262.875548.0687
CEY00_Acc23992actinidia_chinensisPSS0002566.067450.5618avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000467.262.95548.1799
CEY00_Acc23992actinidia_chinensisPSS0002546.516930.5618drosophila_melanogasterFBpp007170041.48327.2545
CEY00_Acc23992actinidia_chinensisPSS0002552.584335.7303homo_sapiensENSP0000022747448.648633.0561
CEY00_Acc23992actinidia_chinensisPSS0002562.696649.2135amborella_trichopodaERM9437462.556149.1031
CEY00_Acc23992actinidia_chinensisPSS0002571.460759.3258corylus_avellanaCav06g04750.t156.483146.8917
CEY00_Acc23992actinidia_chinensisPSS0002576.404563.8202gossypium_raimondiiKJB2892976.404563.8202
CEY00_Acc23992actinidia_chinensisPSS0002577.528166.9663vitis_viniferaVitvi18g02917_P00176.837466.3697
CEY00_Acc23992actinidia_chinensisPSS0002575.280962.9213ipomoea_trilobaitb05g12370.t174.11561.9469
CEY00_Acc23992actinidia_chinensisPSS0002559.550647.8652triticum_turgidumTRITD3Bv1G030400.269.736856.0526
CEY00_Acc23992actinidia_chinensisPSS0002563.370849.8876triticum_turgidumTRITD3Av1G026350.260.907147.9482
CEY00_Acc23992actinidia_chinensisPSS0002565.168550.3371eragrostis_curvulaTVU4682069.879553.9759
CEY00_Acc23992actinidia_chinensisPSS0002560.449446.9663oryza_glumipatulaOGLUM03G20100.166.749451.861
CEY00_Acc23992actinidia_chinensisPSS0002567.19156.1798prunus_aviumPav_sc0000829.1_g540.1.mk:mrna72.048260.241
CEY00_Acc23992actinidia_chinensisPSS0002575.955162.4719coffea_canephoraCDP0113976.29862.754
CEY00_Acc23992actinidia_chinensisPSS0002567.19152.3596brachypodium_distachyonKQK2148866.444451.7778
CEY00_Acc23992actinidia_chinensisPSS0002566.516950.1124arabis_alpinaKFK4512067.120250.5669
CEY00_Acc23992actinidia_chinensisPSS0002541.348335.0562fraxinus_excelsiorFRAEX38873_v2_000259010.1.cds74.796763.4146
CEY00_Acc23992actinidia_chinensisPSS0002571.910162.4719fraxinus_excelsiorFRAEX38873_v2_000328130.1.cds78.239667.9707
CEY00_Acc23992actinidia_chinensisPSS0002560.449446.7416oryza_meridionalisOMERI03G17720.166.749451.6129
CEY00_Acc23992actinidia_chinensisPSS0002560.449446.9663oryza_indicaBGIOSGA012760-PA66.749451.861
CEY00_Acc23992actinidia_chinensisPSS0002543.595528.9888ciona_savignyiENSCSAVP0000000373243.990929.2517
CEY00_Acc23992actinidia_chinensisPSS0002574.157362.0225pistacia_veracds-EVM0010701.175.862163.4483
CEY00_Acc23992actinidia_chinensisPSS0002562.022553.4831quercus_subercds-POF24896.181.176570
CEY00_Acc23992actinidia_chinensisPSS0002573.483161.1236cynara_cardunculusKVH9859577.857164.7619
CEY00_Acc23992actinidia_chinensisPSS0002575.280963.1461juglans_regiacds.Jr06_01190_p173.788561.8943
CEY00_Acc23992actinidia_chinensisPSS0002565.842751.0112arabidopsis_hallerig27255.t166.1451.2415
CEY00_Acc23992actinidia_chinensisPSS0002566.067451.9101eutrema_salsugineumESQ3338165.044351.1062
CEY00_Acc23992actinidia_chinensisPSS0002538.876427.191chara_brauniiGBG6273142.71629.8765
CEY00_Acc23992actinidia_chinensisPSS0002571.685457.3034chenopodium_quinoaAUR62022311-RA:cds62.671950.0982
CEY00_Acc23992actinidia_chinensisPSS0002557.078747.4157chenopodium_quinoaAUR62034929-RA:cds70.949758.9385
CEY00_Acc23992actinidia_chinensisPSS0002573.932663.1461nicotiana_attenuataOIT2640571.677661.22
CEY00_Acc23992actinidia_chinensisPSS0002538.876430.7865eucalyptus_grandisKCW4576571.193456.3786
CEY00_Acc23992actinidia_chinensisPSS0002571.460759.5506eucalyptus_grandisKCW6913470.824159.02
CEY00_Acc23992actinidia_chinensisPSS0002539.325832.1348eucalyptus_grandisKCW6624063.868652.1898
CEY00_Acc23992actinidia_chinensisPSS0002549.213539.5506eucalyptus_grandisKCW5412553.284742.8224
CEY00_Acc23992actinidia_chinensisPSS0002553.483143.3708eucalyptus_grandisKCW5049460.10148.7374
CEY00_Acc23992actinidia_chinensisPSS0002572.134860.6742rosa_chinensisPRQ2454573.287761.6438
CEY00_Acc23992actinidia_chinensisPSS0002557.752846.9663oryza_sativaOs03t0381100-0073.219459.5442
CEY00_Acc23992actinidia_chinensisPSS0002553.483142.2472leersia_perrieriLPERR03G16750.169.18654.6512
CEY00_Acc23992actinidia_chinensisPSS0002564.494449.2135oryza_barthiiOBART03G19490.168.009551.8957
CEY00_Acc23992actinidia_chinensisPSS0002551.23639.1011selaginella_moellendorffiiEFJ1296061.290346.7742
CEY00_Acc23992actinidia_chinensisPSS0002529.213524.4944selaginella_moellendorffiiEFJ2255774.285762.2857
CEY00_Acc23992actinidia_chinensisPSS0002555.280946.7416daucus_carotaKZM9947183.389870.5085
CEY00_Acc23992actinidia_chinensisPSS0002544.494429.4382cyanidioschyzon_merolaeCMK045CT42.398328.0514
CEY00_Acc23992actinidia_chinensisPSS0002562.921349.4382triticum_dicoccoidesTRIDC3AG010980.163.781350.1139
CEY00_Acc23992actinidia_chinensisPSS0002563.820250.3371triticum_dicoccoidesTRIDC3BG014860.164.988651.2586
CEY00_Acc23992actinidia_chinensisPSS0002535.730326.5169ostreococcus_lucimarinusABO9806261.867745.9144
CEY00_Acc23992actinidia_chinensisPSS0002573.258462.4719corymbia_citriodoracds-KAF8026713.171.17960.6987
CEY00_Acc23992actinidia_chinensisPSS0002567.640452.1348echinochloa_crusgalliscaffold18.744.cds63.771249.1525
CEY00_Acc23992actinidia_chinensisPSS0002567.640452.1348echinochloa_crusgalliscaffold183.115.cds63.771249.1525
CEY00_Acc23992actinidia_chinensisPSS0002566.741651.0112echinochloa_crusgalliscaffold126.38.cds63.057348.1953
CEY00_Acc23992actinidia_chinensisPSS0002565.393351.4607eragrostis_tefEt_4A_032742.CDS70.802955.7178
CEY00_Acc23992actinidia_chinensisPSS0002564.269749.2135eragrostis_tefEt_4B_036935.CDS70.967754.3424
CEY00_Acc23992actinidia_chinensisPSS0002560.898946.2921digitaria_exilisDexi9B01G0032820.1:cds63.915148.5849
CEY00_Acc23992actinidia_chinensisPSS0002560.674246.2921digitaria_exilisDexi9A01G0034020.1:cds63.679248.5849
CEY00_Acc23992actinidia_chinensisPSS0002565.61851.236camelina_sativaCsa03g038290.162.393248.7179
CEY00_Acc23992actinidia_chinensisPSS0002564.943850.5618camelina_sativaCsa14g044000.159.710746.4876
CEY00_Acc23992actinidia_chinensisPSS0002543.370833.9326camelina_sativaCsa17g059400.166.551752.069
CEY00_Acc23992actinidia_chinensisPSS0002552.134835.0562saccharomyces_cerevisiaeYFL001W52.488735.2941
CEY00_Acc23992actinidia_chinensisPSS0002545.393333.9326galdieria_sulphurariaEME3209846.651334.873
CEY00_Acc23992actinidia_chinensisPSS0002575.280961.3483corchorus_capsularisOMO8923474.776860.9375
CEY00_Acc23992actinidia_chinensisPSS0002573.483162.0225quercus_lobataQL02p036335:mrna68.4157.7406
CEY00_Acc23992actinidia_chinensisPSS0002565.61851.236arabidopsis_lyratafgenesh2_kg.1__3523__AT1G34150.165.914251.4673
CEY00_Acc23992actinidia_chinensisPSS0002574.38261.7978citrus_clementinaESR4779575.743762.9291
CEY00_Acc23992actinidia_chinensisPSS0002565.168551.6854brassica_rapa_ro18A09p041470.1_BraROA.167.915753.8642
CEY00_Acc23992actinidia_chinensisPSS0002567.640452.1348panicum_halliiPUZ4089363.636449.0486
CEY00_Acc23992actinidia_chinensisPSS0002566.516951.9101hordeum_vulgareHORVU.MOREX.r3.3HG0233670.163.793149.7845
CEY00_Acc23992actinidia_chinensisPSS0002577.303466.7416olea_europaeaOE9A070000C176.274965.8537
CEY00_Acc23992actinidia_chinensisPSS0002558.651746.5169aegilops_tauschiiAET3Gv20199700.168.684254.4737
CEY00_Acc23992actinidia_chinensisPSS0002569.213553.7079musa_acuminataMa02_p16670.167.692352.5275
CEY00_Acc23992actinidia_chinensisPSS0002577.528164.4944theobroma_cacaoEOY2013172.175760.0418
CEY00_Acc23992actinidia_chinensisPSS0002560.224746.7416oryza_nivaraONIVA03G21050.166.501251.6129
CEY00_Acc23992actinidia_chinensisPSS0002571.685456.8539trifolium_pratenseTp57577_TGAC_v2_mRNA2394974.18658.8372
CEY00_Acc23992actinidia_chinensisPSS0002568.988853.9326dioscorea_rotundataDRNTG_28799.262.020248.4848

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression