Description

Ensembl ID CEY00_Acc16557 Gene ID Accession -
Symbol Alias - Full Name TRNA pseudouridine synthase
Status Confidence Length 6964 bases Strand Minus strand
Position LG15 : 3329583 - 3336546 RNA binding domain PseudoU_synth_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PSS09534 PseudoU_synth_1 PF01416 5.2e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PSS09534 2460 521aa PSS09534

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc16557actinidia_chinensisPSS1417881.081171.0425actinidia_chinensisPSS0953480.614270.6334
CEY00_Acc16557actinidia_chinensisPSS1983629.40217.7741actinidia_chinensisPSS0953433.973120.5374
CEY00_Acc16557actinidia_chinensisPSS1798539.849621.8045actinidia_chinensisPSS0953410.17275.56622
CEY00_Acc16557actinidia_chinensisPSS0002530.561818.6517actinidia_chinensisPSS0953426.103615.9309
CEY00_Acc16557actinidia_chinensisPSR8524534.718120.178actinidia_chinensisPSS0953422.456813.0518
CEY00_Acc16557actinidia_chinensisPSS2914928.795816.4921actinidia_chinensisPSS0953421.113212.0921
CEY00_Acc16557actinidia_chinensisPSR8522924.472613.0802actinidia_chinensisPSS0953422.264911.9002

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc16557actinidia_chinensisPSS0953433.205421.1132chlamydomonas_reinhardtiiPNW7124126.94717.134
CEY00_Acc16557actinidia_chinensisPSS0953432.437619.5777chlamydomonas_reinhardtiiPNW8464923.504914.1864
CEY00_Acc16557actinidia_chinensisPSS0953468.330156.4299papaver_somniferumRZC6312267.809556
CEY00_Acc16557actinidia_chinensisPSS0953467.562456.238papaver_somniferumRZC5583968.7557.2266
CEY00_Acc16557actinidia_chinensisPSS0953474.85663.3397ficus_caricaFCD_00014910-RA:cds72.356261.2245
CEY00_Acc16557actinidia_chinensisPSS0953472.936760.2687cannabis_sativa_femalecds.evm.model.06.2078.1.5bd9b13b71.428659.0226
CEY00_Acc16557actinidia_chinensisPSS0953470.633454.1267beta_vulgarisKMT0543168.274652.3191
CEY00_Acc16557actinidia_chinensisPSS0953466.794652.2073citrullus_lanatusCla97C03G051010.168.369453.4381
CEY00_Acc16557actinidia_chinensisPSS0953457.965545.2975cucumis_meloMELO3C020498.2.173.658557.561
CEY00_Acc16557actinidia_chinensisPSS0953457.773544.1459cucumis_sativusKGN6586171.496454.6318
CEY00_Acc16557actinidia_chinensisPSS0953466.986652.2073arabidopsis_thalianaAT2G30320.168.431453.3333
CEY00_Acc16557actinidia_chinensisPSS0953472.168957.3896populus_trichocarpaPotri.013G154200.1.v4.172.307757.5
CEY00_Acc16557actinidia_chinensisPSS0953465.834950.096brassica_junceacds.BjuA03g43640S48.514936.9165
CEY00_Acc16557actinidia_chinensisPSS0953466.218850.096brassica_junceacds.BjuB08g46880S68.316851.6832
CEY00_Acc16557actinidia_chinensisPSS0953466.218850.6718brassica_napusCDX8484569.69753.3333
CEY00_Acc16557actinidia_chinensisPSS0953466.794651.0557brassica_napusCDY2401169.653.2
CEY00_Acc16557actinidia_chinensisPSS0953453.934738.3877marchantia_polymorphaPTQ2920044.46231.6456
CEY00_Acc16557actinidia_chinensisPSS0953472.360859.1171prunus_dulcisVVA1644673.203959.8058
CEY00_Acc16557actinidia_chinensisPSS0953471.401258.7332malus_domestica_goldenmRNA:MD11G005010070.188757.7358
CEY00_Acc16557actinidia_chinensisPSS0953472.552859.1171prunus_persicaONH9970673.398159.8058
CEY00_Acc16557actinidia_chinensisPSS0953464.683354.3186cajanus_cajanC.cajan_05427.t73.10261.3883
CEY00_Acc16557actinidia_chinensisPSS0953463.147851.0557cajanus_cajanC.cajan_05426.t79.277164.0964
CEY00_Acc16557actinidia_chinensisPSS0953465.451150.4798medicago_truncatulaAES9892770.600454.4513
CEY00_Acc16557actinidia_chinensisPSS0953467.178553.7428medicago_truncatulaAES9892969.860355.8882
CEY00_Acc16557actinidia_chinensisPSS0953460.844547.7927lupinus_angustifoliusOIW0260070.132755.0885
CEY00_Acc16557actinidia_chinensisPSS0953467.562455.8541lupinus_angustifoliusOIW0440170.259558.0838
CEY00_Acc16557actinidia_chinensisPSS0953462.57249.3282pisum_sativumPsat0s1662g0080.2.cds75.288759.3533
CEY00_Acc16557actinidia_chinensisPSS0953432.053726.8714pisum_sativumPsat2g052720.1.cds71.367559.8291
CEY00_Acc16557actinidia_chinensisPSS0953468.138257.7735glycine_maxKRH7277972.008161.0548
CEY00_Acc16557actinidia_chinensisPSS0953467.754353.9347glycine_maxKRG8846368.146754.2471
CEY00_Acc16557actinidia_chinensisPSS0953467.946353.7428glycine_maxKRH7277768.604754.2636
CEY00_Acc16557actinidia_chinensisPSS0953468.138253.5509phaseolus_vulgarisESW1406669.335954.4922
CEY00_Acc16557actinidia_chinensisPSS0953468.138258.1574phaseolus_vulgarisESW1406570.019759.7633
CEY00_Acc16557actinidia_chinensisPSS0953466.410855.6622vigna_radiataVradi06g06650.162.794952.6316
CEY00_Acc16557actinidia_chinensisPSS0953457.965546.833vigna_radiataVradi06g06670.162.396750.4132
CEY00_Acc16557actinidia_chinensisPSS0953470.825357.7735manihot_esculentaOAY2415372.495159.1356
CEY00_Acc16557actinidia_chinensisPSS0953468.330157.5816vigna_unguiculataVigun08g132200.1.v1.271.919260.6061
CEY00_Acc16557actinidia_chinensisPSS0953466.986653.9347vigna_unguiculataVigun08g132100.1.v1.266.858253.8314
CEY00_Acc16557actinidia_chinensisPSS0953474.664163.5317sesamum_indicumSIN_1023215.t69.340559.0018
CEY00_Acc16557actinidia_chinensisPSS0953469.097955.8541helianthus_annuusmRNA:HanXRQr2_Chr08g034477170.450156.9472
CEY00_Acc16557actinidia_chinensisPSS0953467.754352.975solanum_lycopersicumSolyc09g056260.3.170.178954.8708
CEY00_Acc16557actinidia_chinensisPSS0953470.825357.3896lactuca_sativacds-PLY77741.172.352958.6275
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_longistaminataKN539057.1_FGP01163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953463.531748.1766oryza_brachyanthaOB03G26360.163.899648.4556
CEY00_Acc16557actinidia_chinensisPSS0953464.683348.5605avena_sativa_sangAVESA.00010b.r2.5DG1000120.1.CDS63.825847.9167
CEY00_Acc16557actinidia_chinensisPSS0953464.299448.7524avena_sativa_sangAVESA.00010b.r2.5AG0807410.1.CDS62.969947.7444
CEY00_Acc16557actinidia_chinensisPSS0953464.491448.5605avena_sativa_sangAVESA.00010b.r2.4CG1316950.1.CDS63.636447.9167
CEY00_Acc16557actinidia_chinensisPSS0953460.844546.2572lolium_perennecds.KYUSt_chr4.2809569.977953.2009
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_glaberrimaORGLA03G0159600.163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953463.531747.7927setaria_italicaKQK9097463.776547.9769
CEY00_Acc16557actinidia_chinensisPSS0953464.683349.3282secale_cerealeSECCE4Rv1G0240200.164.068448.8593
CEY00_Acc16557actinidia_chinensisPSS0953463.531748.1766oryza_punctataOPUNC03G16140.163.531748.1766
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_rufipogonORUFI03G17200.163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953463.339747.6008setaria_viridisTKV9621463.583847.7842
CEY00_Acc16557actinidia_chinensisPSS0953464.683349.5202triticum_urartuTuG1812G0400001824.01.T0364.068449.0494
CEY00_Acc16557actinidia_chinensisPSS0953455.086439.5393physcomitrium_patensPp3c2_21310V3.144.773832.1373
CEY00_Acc16557actinidia_chinensisPSS0953468.71455.0864ananas_comosusAco001616.1.mrna166.79153.5448
CEY00_Acc16557actinidia_chinensisPSS0953464.299449.1363triticum_aestivumTraesCS4D02G170500.163.931348.855
CEY00_Acc16557actinidia_chinensisPSS0953464.683349.7121triticum_aestivumTraesCS4A02G136700.164.068449.2395
CEY00_Acc16557actinidia_chinensisPSS0953463.915548.9443triticum_aestivumTraesCS4B02G167800.163.671148.7572
CEY00_Acc16557actinidia_chinensisPSS0953463.723647.7927sorghum_bicolorEER9489063.846247.8846
CEY00_Acc16557actinidia_chinensisPSS0953463.339747.6008zea_maysZm00001eb016190_P00163.953548.062
CEY00_Acc16557actinidia_chinensisPSS0953467.178555.0864asparagus_officinalisONK6245857.851247.438
CEY00_Acc16557actinidia_chinensisPSS0953464.683348.5605avena_sativa_ot3098cds.AVESA.00001b.r3.5Dg0000323.161.496346.1679
CEY00_Acc16557actinidia_chinensisPSS0953464.299448.7524avena_sativa_ot3098cds.AVESA.00001b.r3.5Ag0000714.158.66944.4834
CEY00_Acc16557actinidia_chinensisPSS0953464.491448.5605avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0003008.160.649845.6679
CEY00_Acc16557actinidia_chinensisPSS0953445.105633.5893amborella_trichopodaERN0410269.940552.0833
CEY00_Acc16557actinidia_chinensisPSS0953470.633457.7735corylus_avellanaCav10g15830.t176.033162.1901
CEY00_Acc16557actinidia_chinensisPSS0953473.704462.572gossypium_raimondiiKJB2048975.44264.0471
CEY00_Acc16557actinidia_chinensisPSS0953474.472263.3397vitis_viniferaVitvi06g00764_P00175.193863.9535
CEY00_Acc16557actinidia_chinensisPSS0953471.97757.5816ipomoea_trilobaitb04g27580.t172.815558.2524
CEY00_Acc16557actinidia_chinensisPSS0953464.491449.7121triticum_turgidumTRITD4Av1G072560.263.878349.2395
CEY00_Acc16557actinidia_chinensisPSS0953464.299449.1363triticum_turgidumTRITD4Bv1G104730.259.397245.3901
CEY00_Acc16557actinidia_chinensisPSS0953466.026948.7524eragrostis_curvulaTVU4713365.523848.381
CEY00_Acc16557actinidia_chinensisPSS0953463.147848.3685oryza_glumipatulaOGLUM03G17050.163.759748.8372
CEY00_Acc16557actinidia_chinensisPSS0953466.602753.9347prunus_aviumPav_sc0000375.1_g330.1.mk:mrna73.987259.9147
CEY00_Acc16557actinidia_chinensisPSS0953473.128662.9559coffea_canephoraCDP0407070.817860.9665
CEY00_Acc16557actinidia_chinensisPSS0953465.259149.7121brachypodium_distachyonKQK2177965.134149.6169
CEY00_Acc16557actinidia_chinensisPSS0953465.64351.0557arabis_alpinaKFK2451568.127552.988
CEY00_Acc16557actinidia_chinensisPSS0953475.239963.1478fraxinus_excelsiorFRAEX38873_v2_000102240.2.cds75.529963.3911
CEY00_Acc16557actinidia_chinensisPSS0953463.147847.9846oryza_meridionalisOMERI03G14900.163.147847.9846
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_indicaBGIOSGA010777-PA45.706434.903
CEY00_Acc16557actinidia_chinensisPSS0953473.128661.2284pistacia_veracds-EVM0002976.173.269261.3462
CEY00_Acc16557actinidia_chinensisPSS0953474.088360.8445quercus_subercds-POE84706.176.284662.6482
CEY00_Acc16557actinidia_chinensisPSS0953474.472263.3397juglans_regiacds.Jr14_07910_p175.048463.8298
CEY00_Acc16557actinidia_chinensisPSS0953425.335922.6488juglans_regiacds.Jr05_06610_p17567.0455
CEY00_Acc16557actinidia_chinensisPSS0953466.794652.5912arabidopsis_hallerig24227.t169.047654.3651
CEY00_Acc16557actinidia_chinensisPSS0953466.218852.3992eutrema_salsugineumESQ5158567.382853.3203
CEY00_Acc16557actinidia_chinensisPSS0953463.915550.4798chenopodium_quinoaAUR62036228-RA:cds70.550855.7203
CEY00_Acc16557actinidia_chinensisPSS0953469.097954.3186chenopodium_quinoaAUR62009718-RA:cds66.298352.1179
CEY00_Acc16557actinidia_chinensisPSS0953471.017357.5816eucalyptus_grandisKCW5380769.943356.7108
CEY00_Acc16557actinidia_chinensisPSS0953472.168958.1574rosa_chinensisPRQ3472373.437559.1797
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_sativaOs03t0338600-0163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953464.299448.7524leersia_perrieriLPERR03G14570.164.671849.0347
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_barthiiOBART03G16660.163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953447.02531.286selaginella_moellendorffiiEFJ2654857.24338.0841
CEY00_Acc16557actinidia_chinensisPSS0953446.449132.6296selaginella_moellendorffiiEFJ1568155.377638.9016
CEY00_Acc16557actinidia_chinensisPSS0953444.721732.4376selaginella_moellendorffiiEFJ3823857.816441.9355
CEY00_Acc16557actinidia_chinensisPSS0953456.23844.7217daucus_carotaKZN0396564.537451.3216
CEY00_Acc16557actinidia_chinensisPSS0953467.178552.3992kalanchoe_fedtschenkoiKaladp0075s0066.1.v1.168.359453.3203
CEY00_Acc16557actinidia_chinensisPSS0953439.347422.4568cyanidioschyzon_merolaeCMH251CT26.520115.1358
CEY00_Acc16557actinidia_chinensisPSS0953459.50144.5298saccharum_spontaneumSspon.01G0009230-1A-mRNA-1:cds69.662952.1348
CEY00_Acc16557actinidia_chinensisPSS0953444.721732.2457saccharum_spontaneumSspon.01G0009230-1P-mRNA-1:cds58.39642.1053
CEY00_Acc16557actinidia_chinensisPSS0953464.683349.7121triticum_dicoccoidesTRIDC4AG019080.364.068449.2395
CEY00_Acc16557actinidia_chinensisPSS0953463.915548.9443triticum_dicoccoidesTRIDC4BG030570.560.545546.3636
CEY00_Acc16557actinidia_chinensisPSS0953443.186227.4472ostreococcus_lucimarinusABO9994240.467625.7194
CEY00_Acc16557actinidia_chinensisPSS0953470.057657.1977corymbia_citriodoracds-KAF8011669.168.738256.1205
CEY00_Acc16557actinidia_chinensisPSS0953463.531747.7927echinochloa_crusgalliscaffold74.312.cds62.927847.3384
CEY00_Acc16557actinidia_chinensisPSS0953463.723647.9846echinochloa_crusgalliscaffold18.495.cds63.238147.619
CEY00_Acc16557actinidia_chinensisPSS0953464.299448.1766echinochloa_crusgalliscaffold22.502.cds63.567447.6281
CEY00_Acc16557actinidia_chinensisPSS0953464.491448.1766eragrostis_tefEt_4B_036738.CDS64.367848.0843
CEY00_Acc16557actinidia_chinensisPSS0953453.550939.7313eragrostis_tefEt_4A_032550.CDS62.138146.1025
CEY00_Acc16557actinidia_chinensisPSS0953463.723647.6008digitaria_exilisDexi9B01G0035130.1:cds64.216647.9691
CEY00_Acc16557actinidia_chinensisPSS0953462.955947.4088digitaria_exilisDexi9A01G0036450.1:cds60.183545.3211
CEY00_Acc16557actinidia_chinensisPSS0953466.986652.5912camelina_sativaCsa16g014570.168.431453.7255
CEY00_Acc16557actinidia_chinensisPSS0953447.216935.8925camelina_sativaCsa07g012850.166.307350.4043
CEY00_Acc16557actinidia_chinensisPSS0953452.97542.0345camelina_sativaCsa05g032180.170.22955.7252
CEY00_Acc16557actinidia_chinensisPSS0953466.410852.3992camelina_sativaCsa05g033420.168.650854.1667
CEY00_Acc16557actinidia_chinensisPSS0953446.641126.4875galdieria_sulphurariaEME3074437.909521.5289
CEY00_Acc16557actinidia_chinensisPSS0953468.138255.8541corchorus_capsularisOMO8297672.154559.1463
CEY00_Acc16557actinidia_chinensisPSS0953474.088361.2284quercus_lobataQL01p025515:mrna71.217758.8561
CEY00_Acc16557actinidia_chinensisPSS0953466.794652.975arabidopsis_lyratafgenesh2_kg.4__1003__AT2G30320.168.639154.4379
CEY00_Acc16557actinidia_chinensisPSS0953447.984640.499citrus_clementinaESR4521865.789555.5263
CEY00_Acc16557actinidia_chinensisPSS0953465.64349.904brassica_rapa_ro18A03g502070.1_BraROA.167.992151.6899
CEY00_Acc16557actinidia_chinensisPSS0953463.339747.4088panicum_halliiPUZ4118563.706647.6834
CEY00_Acc16557actinidia_chinensisPSS0953463.723649.5202hordeum_vulgareHORVU.MOREX.r3.4HG0378050.163.846249.6154
CEY00_Acc16557actinidia_chinensisPSS0953475.04863.3397olea_europaeaOE9A051038C173.22161.7978
CEY00_Acc16557actinidia_chinensisPSS0953461.420346.6411aegilops_tauschiiAET4Gv20447600.1769.114552.4838
CEY00_Acc16557actinidia_chinensisPSS0953466.410850.4798brassica_oleraceaBo3g024490.169.617752.9175
CEY00_Acc16557actinidia_chinensisPSS0953465.259151.6315nymphaea_colorataNC2G0288010.1:cds53.712542.4961
CEY00_Acc16557actinidia_chinensisPSS0953469.097956.8138musa_acuminataMa06_p34260.168.965556.705
CEY00_Acc16557actinidia_chinensisPSS0953463.531753.3589vigna_angularisKOM4718969.978958.7738
CEY00_Acc16557actinidia_chinensisPSS0953456.621945.4894vigna_angularisKOM4719064.835252.0879
CEY00_Acc16557actinidia_chinensisPSS0953472.552860.8445theobroma_cacaoEOY3465974.556262.5247
CEY00_Acc16557actinidia_chinensisPSS0953463.339748.3685oryza_nivaraONIVA03G17690.163.953548.8372
CEY00_Acc16557actinidia_chinensisPSS0953456.813845.1056trifolium_pratenseTp57577_TGAC_v2_mRNA2828571.670756.9007
CEY00_Acc16557actinidia_chinensisPSS0953465.834953.3589trifolium_pratenseTp57577_TGAC_v2_mRNA2828868.055655.1587
CEY00_Acc16557actinidia_chinensisPSS0953469.289854.7025dioscorea_rotundataDRNTG_04013.369.691155.0193

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression