RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	CEY00_Acc09545	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Protein SMG7L like
Status	Confidence	Length	6183 bases	Strand	Minus strand
Position	LG8 : 22134372 - 22140554	RNA binding domain	EST1 , EST1_DNA_bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
PSS24630	EST1	PF10374	1.9e-18	1
PSS24630	EST1_DNA_bind	PF10373	3.8e-54	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	PSS24630	4441	945aa	PSS24630

Gene Model

Click here to download CEY00_Acc09545's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download CEY00_Acc09545's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CEY00_Acc09545	actinidia_chinensis	PSS10226	92.0719	87.7378	actinidia_chinensis	PSS24630	92.1693	87.8307
CEY00_Acc09545	actinidia_chinensis	PSR90134	38.1148	22.541	actinidia_chinensis	PSS24630	39.3651	23.2804
CEY00_Acc09545	actinidia_chinensis	PSS15726	48.4064	28.2869	actinidia_chinensis	PSS24630	25.7143	15.0265
CEY00_Acc09545	actinidia_chinensis	PSS34993	38.0612	22.449	actinidia_chinensis	PSS24630	39.4709	23.2804
CEY00_Acc09545	actinidia_chinensis	PSS15727	36.5753	21.5068	actinidia_chinensis	PSS24630	28.254	16.6138
CEY00_Acc09545	actinidia_chinensis	PSS33522	38.4065	22.5741	actinidia_chinensis	PSS24630	39.7884	23.3862
CEY00_Acc09545	actinidia_chinensis	PSR86776	37.0522	21.5967	actinidia_chinensis	PSS24630	38.3069	22.328

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CEY00_Acc09545	actinidia_chinensis	PSS24630	38.2011	20.9524	chlamydomonas_reinhardtii	PNW71308	17.7483	9.73451
CEY00_Acc09545	actinidia_chinensis	PSS24630	43.3862	32.4868	papaver_somniferum	RZC65352	62.5954	46.8702
CEY00_Acc09545	actinidia_chinensis	PSS24630	54.2857	41.0582	papaver_somniferum	RZC65350	54.2283	41.0148
CEY00_Acc09545	actinidia_chinensis	PSS24630	59.1534	44.3386	papaver_somniferum	RZC65351	52.7358	39.5283
CEY00_Acc09545	actinidia_chinensis	PSS24630	64.2328	48.3598	cannabis_sativa_female	cds.evm.model.09.573	60.4582	45.5179
CEY00_Acc09545	actinidia_chinensis	PSS24630	54.4974	40.2116	beta_vulgaris	KMT04650	60.5882	44.7059
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.3757	45.7143	citrullus_lanatus	Cla97C03G059460.1	58.5859	43.6364
CEY00_Acc09545	actinidia_chinensis	PSS24630	62.1164	45.1852	cucumis_melo	MELO3C002612.2.1	56.1722	40.8612
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.5873	45.0794	cucumis_sativus	KGN64688	58.6103	42.9003
CEY00_Acc09545	actinidia_chinensis	PSS24630	53.3333	38.7302	arabidopsis_thaliana	AT1G28260.1	57.2727	41.5909
CEY00_Acc09545	actinidia_chinensis	PSS24630	67.5132	51.3228	populus_trichocarpa	Potri.004G045300.8.v4.1	61.7619	46.9506
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.4656	52.4868	populus_trichocarpa	Potri.011G053800.2.v4.1	61.0954	46.8366
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.4868	38.2011	brassica_juncea	cds.BjuB04g19170S	57.6744	41.9767
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.1587	38.3069	brassica_juncea	cds.BjuA08g21400S	59.1022	45.1372
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.1693	38.0952	brassica_juncea	cds.BjuA09g27110S	57.4592	41.958
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.3704	38.9418	brassica_juncea	cds.BjuB03g44810S	57.1429	44.1777
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.1693	37.8836	brassica_napus	CDY46283	57.6608	41.8713
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.1587	38.3069	brassica_napus	CDX90139	59.1022	45.1372
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.2645	37.4603	brassica_napus	CDY35726	58.7871	43.8119
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.4868	38.3069	brassica_napus	CDY46614	57.8089	42.1911
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.0794	52.381	prunus_dulcis	VVA24493	61.9335	49.8489
CEY00_Acc09545	actinidia_chinensis	PSS24630	62.328	49.7355	malus_domestica_golden	mRNA:MD10G0247800	60.102	47.9592
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.0794	51.9577	prunus_persica	ONI10464	57.9642	46.2771
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.9048	46.5608	cajanus_cajan	C.cajan_31320.t	58.1511	43.7376
CEY00_Acc09545	actinidia_chinensis	PSS24630	60.6349	45.3968	cajanus_cajan	C.cajan_19950.t	58.6489	43.9099
CEY00_Acc09545	actinidia_chinensis	PSS24630	60.8466	45.6085	medicago_truncatula	AES63848	48.36	36.2489
CEY00_Acc09545	actinidia_chinensis	PSS24630	55.9788	42.328	lupinus_angustifolius	OIV91736	58.1958	44.0044
CEY00_Acc09545	actinidia_chinensis	PSS24630	58.4127	43.1746	lupinus_angustifolius	OIV96167	57.8616	42.7673
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.3757	45.291	pisum_sativum	Psat1g204200.1.cds	57.5397	42.4603
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.4815	46.1376	glycine_max	KRH21416	57.984	43.513
CEY00_Acc09545	actinidia_chinensis	PSS24630	62.4339	46.6667	glycine_max	KRH50069	58.8235	43.9681
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.6931	46.7725	glycine_max	KRH10896	56.9892	43.2063
CEY00_Acc09545	actinidia_chinensis	PSS24630	62.8571	46.7725	glycine_max	KRH20434	59.4	44.2
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.0582	45.1852	phaseolus_vulgaris	ESW31329	57.9899	42.9146
CEY00_Acc09545	actinidia_chinensis	PSS24630	55.4497	41.4815	vigna_radiata	Vradi10g10790.1	57.2052	42.7948
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.5608	50.7937	capsicum_annuum	PHT90441	63.7931	48.6815
CEY00_Acc09545	actinidia_chinensis	PSS24630	67.9365	51.8519	manihot_esculenta	OAY26205	63.0029	48.0864
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.5608	51.2169	manihot_esculenta	OAY24826	63.1526	48.5944
CEY00_Acc09545	actinidia_chinensis	PSS24630	55.5556	41.6931	vigna_unguiculata	Vigun06g200000.2.v1.2	56.8182	42.6407
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.1481	53.3333	solanum_tuberosum	PGSC0003DMT400076378	65.2482	51.0638
CEY00_Acc09545	actinidia_chinensis	PSS24630	63.3862	49.7355	sesamum_indicum	SIN_1005287.t	60.8122	47.7157
CEY00_Acc09545	actinidia_chinensis	PSS24630	59.1534	46.0317	helianthus_annuus	mRNA:HanXRQr2_Chr16g0756841	66.9461	52.0958
CEY00_Acc09545	actinidia_chinensis	PSS24630	67.8307	52.9101	solanum_lycopersicum	Solyc02g078020.3.1	64.9443	50.6586
CEY00_Acc09545	actinidia_chinensis	PSS24630	54.9206	41.6931	lactuca_sativa	cds-PLY63949.1	64.7132	49.1272
CEY00_Acc09545	actinidia_chinensis	PSS24630	34.4974	20.4233	physcomitrium_patens	Pp3c1_35310V3.2	28.031	16.595
CEY00_Acc09545	actinidia_chinensis	PSS24630	18.7302	9.94709	caenorhabditis_elegans	Y73B6A.4.1	38.6463	20.524
CEY00_Acc09545	actinidia_chinensis	PSS24630	32.6984	18.4127	homo_sapiens	ENSP00000510175	26.032	14.6588
CEY00_Acc09545	actinidia_chinensis	PSS24630	45.8201	32.4868	amborella_trichopoda	ERN15018	44.2288	31.3585
CEY00_Acc09545	actinidia_chinensis	PSS24630	69.418	54.1799	corylus_avellana	Cav02g29470.t1	65.0794	50.7937
CEY00_Acc09545	actinidia_chinensis	PSS24630	67.619	51.8519	gossypium_raimondii	KJB66728	63.4558	48.6594
CEY00_Acc09545	actinidia_chinensis	PSS24630	71.5344	56.5079	vitis_vinifera	Vitvi10g04324_P003	66.2096	52.3017
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.7143	51.5344	ipomoea_triloba	itb01g05550.t2	64.2192	50.3619
CEY00_Acc09545	actinidia_chinensis	PSS24630	67.9365	53.3333	ipomoea_triloba	itb09g07400.t2	65.4434	51.3761
CEY00_Acc09545	actinidia_chinensis	PSS24630	62.963	49.9471	prunus_avium	Pav_sc0001305.1_g780.1.mk:mrna	55.4004	43.9479
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.5608	51.2169	coffea_canephora	CDO99524	63.1526	48.5944
CEY00_Acc09545	actinidia_chinensis	PSS24630	54.0741	38.7302	arabis_alpina	KFK44699	56.7778	40.6667
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.2434	51.0053	fraxinus_excelsior	FRAEX38873_v2_000156680.3.cds	63.2323	48.6869
CEY00_Acc09545	actinidia_chinensis	PSS24630	64.0212	50.0529	fraxinus_excelsior	FRAEX38873_v2_000219400.1.cds	61.0494	47.7296
CEY00_Acc09545	actinidia_chinensis	PSS24630	69.5238	54.709	pistacia_vera	cds-EVM0013763.1	64.921	51.087
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.4656	53.7566	quercus_suber	cds-POF20336.1	63.8697	50.1481
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.0582	46.5608	cynara_cardunculus	KVH96798	66.3218	50.5747
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.9259	51.8519	juglans_regia	cds.Jr04_16890_p1	61.2586	48.1809
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.9259	51.8519	juglans_regia	cds.Jr04_16900_p1	60.6621	47.7118
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.9841	51.0053	juglans_regia	cds.Jr03_07420_p1	63.5542	48.3936
CEY00_Acc09545	actinidia_chinensis	PSS24630	53.2275	39.4709	arabidopsis_halleri	g12979.t1	56.6441	42.0045
CEY00_Acc09545	actinidia_chinensis	PSS24630	53.1217	38.9418	eutrema_salsugineum	ESQ34032	55.902	40.98
CEY00_Acc09545	actinidia_chinensis	PSS24630	55.9788	41.164	chenopodium_quinoa	AUR62014830-RA:cds	58.1319	42.7473
CEY00_Acc09545	actinidia_chinensis	PSS24630	56.2963	41.4815	chenopodium_quinoa	AUR62017027-RA:cds	57.9521	42.7015
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.254	53.2275	nicotiana_attenuata	OIT28005	65.3495	50.9625
CEY00_Acc09545	actinidia_chinensis	PSS24630	61.3757	45.3968	eucalyptus_grandis	KCW74552	57.3689	42.4332
CEY00_Acc09545	actinidia_chinensis	PSS24630	63.7037	49.418	rosa_chinensis	PRQ28964	62.2544	48.2937
CEY00_Acc09545	actinidia_chinensis	PSS24630	29.2063	16.0847	selaginella_moellendorffii	EFJ27061	41.2556	22.7205
CEY00_Acc09545	actinidia_chinensis	PSS24630	29.5238	15.7672	selaginella_moellendorffii	EFJ21298	38.3769	20.4952
CEY00_Acc09545	actinidia_chinensis	PSS24630	47.1958	34.4974	daucus_carota	KZM84517	64.9199	47.4527
CEY00_Acc09545	actinidia_chinensis	PSS24630	55.873	39.5767	kalanchoe_fedtschenkoi	Kaladp0039s0212.1.v1.1	52.381	37.1032
CEY00_Acc09545	actinidia_chinensis	PSS24630	46.7725	34.6032	camelina_sativa	Csa14g035860.1	57.4772	42.5228
CEY00_Acc09545	actinidia_chinensis	PSS24630	43.3862	31.2169	camelina_sativa	Csa03g031540.1	56.0109	40.3005
CEY00_Acc09545	actinidia_chinensis	PSS24630	44.2328	32.8042	camelina_sativa	Csa17g039110.1	56.3342	41.779
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.8783	51.9577	corchorus_capsularis	OMO76447	63.774	49.5459
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.8889	53.8624	quercus_lobata	QL05p041276:mrna	64.2646	50.2468
CEY00_Acc09545	actinidia_chinensis	PSS24630	48.7831	35.9788	arabidopsis_lyrata	fgenesh1_pg.C_scaffold_4000932	56.4259	41.6157
CEY00_Acc09545	actinidia_chinensis	PSS24630	53.1217	39.0476	arabidopsis_lyrata	fgenesh2_kg.1__2989__AT1G28260.2	57.4371	42.2197
CEY00_Acc09545	actinidia_chinensis	PSS24630	69.5238	54.0741	citrus_clementina	ESR62601	65.1786	50.6944
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.2751	38.0952	brassica_rapa_ro18	A09p049100.1_BraROA.1	57.7103	42.0561
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.2645	37.5661	brassica_rapa_ro18	A08p033960.1_BraROA.1	59.0796	44.1542
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.3968	50.582	olea_europaea	OE9A074946C1	60.2927	46.6341
CEY00_Acc09545	actinidia_chinensis	PSS24630	65.6085	51.1111	olea_europaea	OE9A091036C8	62.5631	48.7386
CEY00_Acc09545	actinidia_chinensis	PSS24630	66.3492	51.5344	olea_europaea	OE9A097571C2	63.0785	48.994
CEY00_Acc09545	actinidia_chinensis	PSS24630	50.1587	37.4603	brassica_oleracea	Bo3g143280.1	58.6634	43.8119
CEY00_Acc09545	actinidia_chinensis	PSS24630	52.1693	37.9894	brassica_oleracea	Bo5g054690.1	57.7283	42.0375
CEY00_Acc09545	actinidia_chinensis	PSS24630	42.0106	26.9841	nymphaea_colorata	NC1G0133750.1:cds	33.6726	21.6285
CEY00_Acc09545	actinidia_chinensis	PSS24630	68.5714	53.7566	theobroma_cacao	EOY28213	63.7168	49.9508

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression