Description

Ensembl ID CEY00_Acc06709 Gene ID Accession -
Symbol Alias - Full Name TRNA pseudouridine synthase
Status Confidence Length 15887 bases Strand Minus strand
Position LG6 : 12496290 - 12512176 RNA binding domain PseudoU_synth_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PSS29149 PseudoU_synth_1 PF01416 2.1e-36 1
PSS29149 PseudoU_synth_1 PF01416 2.1e-36 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PSS29149 1448 382aa PSS29149

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc06709actinidia_chinensisPSR8522923.417714.9789actinidia_chinensisPSS2914929.057618.5864
CEY00_Acc06709actinidia_chinensisPSS1417820.270311.9691actinidia_chinensisPSS2914927.486916.2304
CEY00_Acc06709actinidia_chinensisPSS1983618.770810.6312actinidia_chinensisPSS2914929.581216.7539
CEY00_Acc06709actinidia_chinensisPSS0953421.113212.0921actinidia_chinensisPSS2914928.795816.4921
CEY00_Acc06709actinidia_chinensisPSS0002526.741615.5056actinidia_chinensisPSS2914931.151818.0628
CEY00_Acc06709actinidia_chinensisPSR8524538.278922.5519actinidia_chinensisPSS2914933.769619.8953
CEY00_Acc06709actinidia_chinensisPSS1798515.789510.5263actinidia_chinensisPSS291495.497383.66492

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc06709actinidia_chinensisPSS2914971.989561.2565papaver_somniferumRZC6264867.73457.6355
CEY00_Acc06709actinidia_chinensisPSS2914971.989561.2565papaver_somniferumRZC5458571.801661.0966
CEY00_Acc06709actinidia_chinensisPSS2914979.842969.8953ficus_caricaFCD_00014079-RA:cds82.655872.3577
CEY00_Acc06709actinidia_chinensisPSS2914940.837733.7696cannabis_sativa_femalecds.evm.model.06.213784.324369.7297
CEY00_Acc06709actinidia_chinensisPSS2914973.560264.1361beta_vulgarisKMT0794676.151866.3957
CEY00_Acc06709actinidia_chinensisPSS2914975.392764.3979citrullus_lanatusCla97C11G219190.181.586469.6884
CEY00_Acc06709actinidia_chinensisPSS2914975.130964.1361cucumis_meloMELO3C011820.2.177.777866.3957
CEY00_Acc06709actinidia_chinensisPSS2914974.607363.6126cucumis_sativusKGN5162980.965969.0341
CEY00_Acc06709actinidia_chinensisPSS2914974.869162.0419arabidopsis_thalianaAT1G09800.176.881763.7097
CEY00_Acc06709actinidia_chinensisPSS2914977.748767.5393populus_trichocarpaPotri.003G008500.1.v4.180.487869.9187
CEY00_Acc06709actinidia_chinensisPSS2914974.083862.3037brassica_junceacds.BjuB04g28860S77.322465.0273
CEY00_Acc06709actinidia_chinensisPSS2914971.727760.4712brassica_junceacds.BjuB02g04390S79.651267.1512
CEY00_Acc06709actinidia_chinensisPSS2914969.895359.6859brassica_napusCDY2262084.493772.1519
CEY00_Acc06709actinidia_chinensisPSS2914972.251361.5183brassica_napusCDX9494674.594663.5135
CEY00_Acc06709actinidia_chinensisPSS2914969.371759.1623brassica_napusCDY0637383.860871.519
CEY00_Acc06709actinidia_chinensisPSS2914963.612649.4764marchantia_polymorphaPTQ4497449.795138.7295
CEY00_Acc06709actinidia_chinensisPSS2914980.104767.5393prunus_dulcisVVA2433884.065970.8791
CEY00_Acc06709actinidia_chinensisPSS2914978.53467.0157malus_domestica_goldenmRNA:MD08G020110083.102570.9141
CEY00_Acc06709actinidia_chinensisPSS2914979.057667.2775malus_domestica_goldenmRNA:MD15G036810084.357571.7877
CEY00_Acc06709actinidia_chinensisPSS2914980.366567.801prunus_persicaONI3626884.109670.9589
CEY00_Acc06709actinidia_chinensisPSS2914978.272366.2304cajanus_cajanC.cajan_17268.t81.471468.9373
CEY00_Acc06709actinidia_chinensisPSS2914974.083862.8272medicago_truncatulaAES6317778.393366.482
CEY00_Acc06709actinidia_chinensisPSS2914978.010568.3246glycine_maxKRH0607280.540570.5405
CEY00_Acc06709actinidia_chinensisPSS2914979.057668.3246glycine_maxKRH2632081.842870.7317
CEY00_Acc06709actinidia_chinensisPSS2914977.225164.9215phaseolus_vulgarisESW2055579.088566.4879
CEY00_Acc06709actinidia_chinensisPSS2914958.115249.4764vigna_radiataVradi10g13350.177.351965.8537
CEY00_Acc06709actinidia_chinensisPSS2914981.675470.4188capsicum_annuumPHT6363381.2570.0521
CEY00_Acc06709actinidia_chinensisPSS2914972.251362.3037manihot_esculentaOAY4500881.899170.6231
CEY00_Acc06709actinidia_chinensisPSS2914964.397954.1885vigna_unguiculataVigun06g238800.2.v1.277.358565.0943
CEY00_Acc06709actinidia_chinensisPSS2914983.507970.9424solanum_tuberosumPGSC0003DMT40006404282.005169.6658
CEY00_Acc06709actinidia_chinensisPSS2914981.675469.1099sesamum_indicumSIN_1022891.t82.105369.4737
CEY00_Acc06709actinidia_chinensisPSS2914942.931936.3874sesamum_indicumSIN_1026015.t79.227167.1498
CEY00_Acc06709actinidia_chinensisPSS2914937.696331.6754sesamum_indicumSIN_1026014.t55.172446.3602
CEY00_Acc06709actinidia_chinensisPSS2914978.272367.2775helianthus_annuusmRNA:HanXRQr2_Chr09g037584179.100567.9894
CEY00_Acc06709actinidia_chinensisPSS2914983.246170.9424solanum_lycopersicumSolyc01g103560.3.181.748169.6658
CEY00_Acc06709actinidia_chinensisPSS2914977.748766.2304lactuca_sativacds-PLY75857.181.818269.697
CEY00_Acc06709actinidia_chinensisPSS2914950.261843.7173oryza_longistaminataKN538720.1_FGP05176.190566.2698
CEY00_Acc06709actinidia_chinensisPSS2914972.774963.3508oryza_brachyanthaOB12G15150.170.025260.9572
CEY00_Acc06709actinidia_chinensisPSS2914970.680659.1623avena_sativa_sangAVESA.00010b.r2.5AG0828450.1.CDS69.053757.8005
CEY00_Acc06709actinidia_chinensisPSS2914970.942459.9476avena_sativa_sangAVESA.00010b.r2.5CG0910270.1.CDS69.309558.5678
CEY00_Acc06709actinidia_chinensisPSS2914965.44554.1885avena_sativa_sangAVESA.00010b.r2.5DG0980670.1.CDS67.204355.6452
CEY00_Acc06709actinidia_chinensisPSS2914972.251361.2565oryza_glaberrimaORGLA12G0053500.170.588259.8465
CEY00_Acc06709actinidia_chinensisPSS2914971.46661.5183setaria_italicaKQK9937870.909161.039
CEY00_Acc06709actinidia_chinensisPSS2914969.895359.6859secale_cerealeSECCE5Rv1G0312840.168.814458.7629
CEY00_Acc06709actinidia_chinensisPSS2914963.612653.6649oryza_punctataOPUNC12G05300.368.838558.0737
CEY00_Acc06709actinidia_chinensisPSS2914949.214741.0995oryza_rufipogonORUFI12G06190.167.142956.0714
CEY00_Acc06709actinidia_chinensisPSS2914967.277557.0681setaria_viridisTKW0713861.927752.5301
CEY00_Acc06709actinidia_chinensisPSS2914970.157160.2094triticum_urartuTuG1812G0500001502.01.T0169.072259.2784
CEY00_Acc06709actinidia_chinensisPSS2914963.350850.2618physcomitrium_patensPp3c1_13020V3.568.555254.3909
CEY00_Acc06709actinidia_chinensisPSS2914972.774963.6126ananas_comosusAco003341.1.mrna165.258257.0423
CEY00_Acc06709actinidia_chinensisPSS2914970.157160.2094triticum_aestivumTraesCSU02G134800.169.072259.2784
CEY00_Acc06709actinidia_chinensisPSS2914970.157159.9476triticum_aestivumTraesCS5B02G120900.169.072259.0206
CEY00_Acc06709actinidia_chinensisPSS2914970.157159.9476triticum_aestivumTraesCS5A02G115900.169.072259.0206
CEY00_Acc06709actinidia_chinensisPSS2914970.157161.2565sorghum_bicolorEES1580269.250660.4651
CEY00_Acc06709actinidia_chinensisPSS2914969.895358.377zea_maysZm00001eb138750_P00569.17157.772
CEY00_Acc06709actinidia_chinensisPSS2914974.083862.3037asparagus_officinalisONK6892239.360233.1015
CEY00_Acc06709actinidia_chinensisPSS2914971.204260.2094avena_sativa_ot3098cds.AVESA.00001b.r3.5Cg0001065.164.608154.6318
CEY00_Acc06709actinidia_chinensisPSS2914936.387424.8691drosophila_melanogasterFBpp011027545.424831.0458
CEY00_Acc06709actinidia_chinensisPSS2914941.099529.0576homo_sapiensENSP0000036831851.815236.6337
CEY00_Acc06709actinidia_chinensisPSS2914972.251360.9948amborella_trichopodaERN2002375.204463.4877
CEY00_Acc06709actinidia_chinensisPSS2914981.675470.6806corylus_avellanaCav04g01010.t146.917340.6015
CEY00_Acc06709actinidia_chinensisPSS2914979.057669.1099gossypium_raimondiiKJB1619483.195672.7273
CEY00_Acc06709actinidia_chinensisPSS2914981.937271.9895vitis_viniferaVitvi12g02033_P00182.368472.3684
CEY00_Acc06709actinidia_chinensisPSS2914980.890169.8953ipomoea_trilobaitb01g02960.t379.639268.8144
CEY00_Acc06709actinidia_chinensisPSS2914970.157159.9476triticum_turgidumTRITD5Bv1G067650.269.072259.0206
CEY00_Acc06709actinidia_chinensisPSS2914970.418860.2094triticum_turgidumTRITD5Av1G081860.264.047654.7619
CEY00_Acc06709actinidia_chinensisPSS2914967.015758.377eragrostis_curvulaTVU5131469.754860.7629
CEY00_Acc06709actinidia_chinensisPSS2914958.115247.9058oryza_glumipatulaOGLUM12G06310.166.666754.955
CEY00_Acc06709actinidia_chinensisPSS2914937.172831.9372prunus_aviumPav_sc0001196.1_g950.1.mk:mrna83.040971.345
CEY00_Acc06709actinidia_chinensisPSS2914980.628369.1099coffea_canephoraCDO9761381.481569.8413
CEY00_Acc06709actinidia_chinensisPSS2914970.942460.4712brachypodium_distachyonKQJ9191670.207359.8446
CEY00_Acc06709actinidia_chinensisPSS2914974.083863.089arabis_alpinaKFK4327976.075364.7849
CEY00_Acc06709actinidia_chinensisPSS2914981.413670.1571fraxinus_excelsiorFRAEX38873_v2_000079030.1.cds82.493471.0875
CEY00_Acc06709actinidia_chinensisPSS2914958.115247.9058oryza_meridionalisOMERI12G03770.166.666754.955
CEY00_Acc06709actinidia_chinensisPSS2914972.251360.9948oryza_indicaBGIOSGA037127-PA70.588259.5908
CEY00_Acc06709actinidia_chinensisPSS2914970.418857.8534pistacia_veracds-EVM0022530.170.789558.1579
CEY00_Acc06709actinidia_chinensisPSS2914970.418857.8534pistacia_veracds-EVM0014464.170.603758.0052
CEY00_Acc06709actinidia_chinensisPSS2914974.083866.4921quercus_subercds-POF20914.187.888278.882
CEY00_Acc06709actinidia_chinensisPSS2914974.607364.1361cynara_cardunculusKVI0166780.736569.4051
CEY00_Acc06709actinidia_chinensisPSS2914976.439867.2775juglans_regiacds.Jr16_22420_p182.719572.8045
CEY00_Acc06709actinidia_chinensisPSS2914981.675472.2513juglans_regiacds.Jr13_00570_p184.782675
CEY00_Acc06709actinidia_chinensisPSS2914976.963367.801juglans_regiacds.Jr13_00550_p18474
CEY00_Acc06709actinidia_chinensisPSS2914976.701666.4921juglans_regiacds.Jr13_00560_p182.535271.5493
CEY00_Acc06709actinidia_chinensisPSS2914981.937272.5131juglans_regiacds.Jr13_00520_p184.823875.0677
CEY00_Acc06709actinidia_chinensisPSS2914967.80159.1623juglans_regiacds.Jr13_00540_p183.012872.4359
CEY00_Acc06709actinidia_chinensisPSS2914978.795869.3717juglans_regiacds.Jr13_00530_p184.313774.2297
CEY00_Acc06709actinidia_chinensisPSS2914975.130961.7801arabidopsis_hallerig28862.t177.150563.4409
CEY00_Acc06709actinidia_chinensisPSS2914974.607364.1361eutrema_salsugineumESQ3588777.445766.5761
CEY00_Acc06709actinidia_chinensisPSS2914957.853445.8115chara_brauniiGBG7979945.286935.8607
CEY00_Acc06709actinidia_chinensisPSS2914968.324658.377chenopodium_quinoaAUR62043952-RA:cds78.614567.1687
CEY00_Acc06709actinidia_chinensisPSS2914938.743533.7696chenopodium_quinoaAUR62028254-RA:cds81.76871.2707
CEY00_Acc06709actinidia_chinensisPSS2914981.151870.4188nicotiana_attenuataOIT0562679.487268.9744
CEY00_Acc06709actinidia_chinensisPSS2914964.659754.1885eucalyptus_grandisKCW5711880.983667.8689
CEY00_Acc06709actinidia_chinensisPSS2914976.701664.9215rosa_chinensisPRQ3370483.954271.0602
CEY00_Acc06709actinidia_chinensisPSS2914972.251360.9948oryza_sativaOs12t0194800-0170.588259.5908
CEY00_Acc06709actinidia_chinensisPSS2914948.167539.267leersia_perrieriLPERR12G05000.176.666762.5
CEY00_Acc06709actinidia_chinensisPSS2914958.115247.9058oryza_barthiiOBART12G05440.166.666754.955
CEY00_Acc06709actinidia_chinensisPSS2914955.497445.0262selaginella_moellendorffiiEFJ2992770.666757.3333
CEY00_Acc06709actinidia_chinensisPSS2914956.544545.5497selaginella_moellendorffiiEFJ2511967.289754.2056
CEY00_Acc06709actinidia_chinensisPSS2914976.439863.089daucus_carotaKZN0583478.284264.6113
CEY00_Acc06709actinidia_chinensisPSS2914970.680660.4712kalanchoe_fedtschenkoiKaladp0047s0167.1.v1.170.312560.1562
CEY00_Acc06709actinidia_chinensisPSS2914964.659755.2356saccharum_spontaneumSspon.07G0020250-2B-mRNA-1:cds63.989654.6632
CEY00_Acc06709actinidia_chinensisPSS2914969.109959.9476saccharum_spontaneumSspon.07G0020250-1A-mRNA-1:cds68.929559.7911
CEY00_Acc06709actinidia_chinensisPSS2914970.418860.2094triticum_dicoccoidesTRIDC5AG018430.165.133255.6901
CEY00_Acc06709actinidia_chinensisPSS2914969.895359.6859triticum_dicoccoidesTRIDC5BG021030.364.648955.2058
CEY00_Acc06709actinidia_chinensisPSS2914943.717333.5079ostreococcus_lucimarinusABO9871554.220841.5584
CEY00_Acc06709actinidia_chinensisPSS2914976.701664.9215corymbia_citriodoracds-KAF8016049.182.768470.0565
CEY00_Acc06709actinidia_chinensisPSS2914970.680661.2565echinochloa_crusgalliscaffold83.373.cds69.053759.8465
CEY00_Acc06709actinidia_chinensisPSS2914970.680661.2565echinochloa_crusgalliscaffold106.112.cds63.829855.3191
CEY00_Acc06709actinidia_chinensisPSS2914964.397957.0681eragrostis_tefEt_10B_003067.CDS71.511663.3721
CEY00_Acc06709actinidia_chinensisPSS2914965.968658.1152eragrostis_tefEt_10A_000893.CDS57.534250.6849
CEY00_Acc06709actinidia_chinensisPSS2914964.136154.712digitaria_exilisDexi3A01G0005320.1:cds68.245158.2173
CEY00_Acc06709actinidia_chinensisPSS2914960.73352.8796digitaria_exilisDexi3B01G0005320.1:cds76.065666.2295
CEY00_Acc06709actinidia_chinensisPSS2914944.240835.6021camelina_sativaCsa03g013160.167.063553.9683
CEY00_Acc06709actinidia_chinensisPSS2914932.19926.4398camelina_sativaCsa14g011250.173.214360.119
CEY00_Acc06709actinidia_chinensisPSS2914974.607362.0419camelina_sativaCsa14g011260.176.203263.369
CEY00_Acc06709actinidia_chinensisPSS2914945.28837.9581camelina_sativaCsa03g013170.176.888964.4444
CEY00_Acc06709actinidia_chinensisPSS2914975.130961.7801camelina_sativaCsa17g013370.176.127362.5995
CEY00_Acc06709actinidia_chinensisPSS2914981.151869.8953corchorus_capsularisOMO7513983.333371.7742
CEY00_Acc06709actinidia_chinensisPSS2914980.628371.2042quercus_lobataQL02p100436:mrna82.795773.1183
CEY00_Acc06709actinidia_chinensisPSS2914975.130962.0419arabidopsis_lyratafgenesh2_kg.1__1036__AT1G09800.176.943763.5389
CEY00_Acc06709actinidia_chinensisPSS2914971.204261.2565citrus_clementinaESR4489771.204261.2565
CEY00_Acc06709actinidia_chinensisPSS2914971.727760.2094brassica_rapa_ro18A09p079300.1_BraROA.169.89858.6735
CEY00_Acc06709actinidia_chinensisPSS2914970.418860.733panicum_halliiPUZ6324262.558153.9535
CEY00_Acc06709actinidia_chinensisPSS2914970.680660.733hordeum_vulgareHORVU.MOREX.r3.5HG0449120.163.829854.8463
CEY00_Acc06709actinidia_chinensisPSS2914982.460772.5131olea_europaeaOE9A119205C282.031272.1354
CEY00_Acc06709actinidia_chinensisPSS2914970.157160.2094aegilops_tauschiiAET5Gv20314700.565.525756.2347
CEY00_Acc06709actinidia_chinensisPSS2914969.895359.4241brassica_oleraceaBo8g110920.184.493771.8354
CEY00_Acc06709actinidia_chinensisPSS2914946.596937.4346nymphaea_colorataNC13G0298700.1:cds44.38935.6608
CEY00_Acc06709actinidia_chinensisPSS2914974.869165.9686musa_acuminataMa09_p08040.475.461766.4908
CEY00_Acc06709actinidia_chinensisPSS2914972.774962.0419vigna_angularisKOM3172084.242471.8182
CEY00_Acc06709actinidia_chinensisPSS2914980.890170.1571theobroma_cacaoEOX9705982.620371.6578
CEY00_Acc06709actinidia_chinensisPSS2914963.08952.356oryza_nivaraONIVA12G05010.265.667654.4959
CEY00_Acc06709actinidia_chinensisPSS2914976.17863.3508trifolium_pratenseTp57577_TGAC_v2_mRNA217479.076165.7609
CEY00_Acc06709actinidia_chinensisPSS2914974.869164.1361dioscorea_rotundataDRNTG_02107.173.901863.3075

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression