Description

Ensembl ID CEY00_Acc05245 Gene ID Accession -
Symbol Alias - Full Name DNA-directed RNA polymerase II subunit 1 like
Status Confidence Length 10028 bases Strand Plus strand
Position LG5 : 1972288 - 1982315 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
PSS30002 RNA_pol_Rpb1_4 PF05000 1.8e-37 1
PSS30002 RNA_pol_Rpb1_1 PF04997 2.3e-108 2
PSS30002 RNA_pol_Rpb1_5 PF04998 1.9e-103 3
PSS30002 RNA_pol_Rpb1_2 PF00623 5.8e-70 4
PSS30002 RNA_pol_Rpb1_3 PF04983 6.1e-49 5
PSS30002 RNA_pol_Rpb1_6 PF04992 1.1e-63 6
PSS30002 RNA_pol_Rpb1_7 PF04990 1.1e-52 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- PSS30002 5926 1823aa PSS30002

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc05245actinidia_chinensisPSS1984389.556382.5216actinidia_chinensisPSS3000290.784483.6533
CEY00_Acc05245actinidia_chinensisPSS1797889.556382.4134actinidia_chinensisPSS3000290.784483.5436
CEY00_Acc05245actinidia_chinensisPSR9152336.388720.3997actinidia_chinensisPSS3000228.963216.237
CEY00_Acc05245actinidia_chinensisPSS0978328.232815.3736actinidia_chinensisPSS3000221.557911.7389
CEY00_Acc05245actinidia_chinensisPSR9515153.890134.7609actinidia_chinensisPSS3000241.415226.7142
CEY00_Acc05245actinidia_chinensisPSS1913939.912721.5721actinidia_chinensisPSS3000225.068613.5491
CEY00_Acc05245actinidia_chinensisPSS2649626.261114.5401actinidia_chinensisPSS3000229.127816.1273
CEY00_Acc05245actinidia_chinensisPSS1565437.636922.9971actinidia_chinensisPSS3000235.820121.887

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
CEY00_Acc05245actinidia_chinensisPSS3000264.399351.1245chondrus_crispusCDF3860865.005551.6058
CEY00_Acc05245actinidia_chinensisPSS3000270.872255.9517chlamydomonas_reinhardtiiPNW7214071.302456.2914
CEY00_Acc05245actinidia_chinensisPSS3000288.699980.5266beta_vulgarisKMT0692888.943980.7481
CEY00_Acc05245actinidia_chinensisPSS3000288.699980.8009arabidopsis_thalianaAT4G35800.187.928280.0979
CEY00_Acc05245actinidia_chinensisPSS3000288.754881.2397brassica_junceacds.BjuB03g48130S88.174480.7085
CEY00_Acc05245actinidia_chinensisPSS3000287.218978.9907brassica_junceacds.BjuA01g41190S84.574576.5957
CEY00_Acc05245actinidia_chinensisPSS3000286.615578.7164brassica_junceacds.BjuB05g60100S54.940849.9304
CEY00_Acc05245actinidia_chinensisPSS3000288.864581.1849brassica_junceacds.BjuA08g18160S56.21151.3532
CEY00_Acc05245actinidia_chinensisPSS3000282.172274.6572brassica_napusCDX6916656.742451.553
CEY00_Acc05245actinidia_chinensisPSS3000275.315468.1843brassica_napusCDY0887684.805476.7758
CEY00_Acc05245actinidia_chinensisPSS3000285.463577.1256brassica_napusCDX7552757.363851.7673
CEY00_Acc05245actinidia_chinensisPSS3000286.560676.9611marchantia_polymorphaPTQ3558587.520877.8148
CEY00_Acc05245actinidia_chinensisPSS300028.502477.07625malus_domestica_goldenmRNA:MD02G010740068.888957.3333
CEY00_Acc05245actinidia_chinensisPSS300027.515096.03401glycine_maxKRH7517371.727757.5916
CEY00_Acc05245actinidia_chinensisPSS300023.894683.23642capsicum_annuumPHT9268884.523870.2381
CEY00_Acc05245actinidia_chinensisPSS3000290.56583.3242capsicum_annuumPHT9102289.436682.286
CEY00_Acc05245actinidia_chinensisPSS3000213.439412.068capsicum_annuumPHT7435885.365976.6551
CEY00_Acc05245actinidia_chinensisPSS3000211.46469.87383capsicum_annuumPHT9268786.008274.0741
CEY00_Acc05245actinidia_chinensisPSS300024.936924.16895capsicum_annuumPHT7835889.108975.2475
CEY00_Acc05245actinidia_chinensisPSS3000211.13559.98354capsicum_annuumPHT7276287.124578.1116
CEY00_Acc05245actinidia_chinensisPSS300025.211194.33352capsicum_annuumPHT8861294.059478.2178
CEY00_Acc05245actinidia_chinensisPSS300028.008787.07625capsicum_annuumPHT9427082.485972.8814
CEY00_Acc05245actinidia_chinensisPSS3000213.439411.9583capsicum_annuumPHT8347188.129578.4173
CEY00_Acc05245actinidia_chinensisPSS300029.215587.40538capsicum_annuumPHT7618877.777862.5
CEY00_Acc05245actinidia_chinensisPSS300028.33797.40538capsicum_annuumPHT9427183.516574.1758
CEY00_Acc05245actinidia_chinensisPSS300028.118496.58256capsicum_annuumPHT7835764.069351.9481
CEY00_Acc05245actinidia_chinensisPSS3000215.523910.9709capsicum_annuumPHT7891450.177335.461
CEY00_Acc05245actinidia_chinensisPSS3000289.961683.0499solanum_tuberosumPGSC0003DMT40000924989.178982.3274
CEY00_Acc05245actinidia_chinensisPSS3000289.467981.9528sesamum_indicumSIN_1015906.t82.918275.9532
CEY00_Acc05245actinidia_chinensisPSS3000291.387884.147sesamum_indicumSIN_1004850.t90.151583.0087
CEY00_Acc05245actinidia_chinensisPSS3000290.400483.5436solanum_lycopersicumSolyc02g083350.3.189.274182.5027
CEY00_Acc05245actinidia_chinensisPSS300026.692275.26605solanum_lycopersicumSolyc02g083220.2.187.769869.0648
CEY00_Acc05245actinidia_chinensisPSS300026.911686.74712oryza_longistaminataAMDW01030499.1_FGP00196.923194.6154
CEY00_Acc05245actinidia_chinensisPSS3000251.398845.0905oryza_rufipogonORUFI08G03710.270.984862.2727
CEY00_Acc05245actinidia_chinensisPSS3000212.12297.7345physcomitrium_patensPp3c10_11540V3.153.381634.058
CEY00_Acc05245actinidia_chinensisPSS3000221.393312.6714physcomitrium_patensPp3c16_6060V3.150.583729.9611
CEY00_Acc05245actinidia_chinensisPSS300028.008784.49808physcomitrium_patensPp3c1_10580V3.150.344828.2759
CEY00_Acc05245actinidia_chinensisPSS300023.071861.86506physcomitrium_patensPAC:32962516.CDS.161.538537.3626
CEY00_Acc05245actinidia_chinensisPSS3000216.29189.81898physcomitrium_patensPAC:32927520.CDS.151.295330.9154
CEY00_Acc05245actinidia_chinensisPSS300027.789364.88206physcomitrium_patensPp3c11_15730V3.155.468834.7656
CEY00_Acc05245actinidia_chinensisPSS300025.650033.83982physcomitrium_patensPp3c5_18540V3.159.195440.2299
CEY00_Acc05245actinidia_chinensisPSS300028.447615.37575physcomitrium_patensPp3c21_8550V3.152.38133.3333
CEY00_Acc05245actinidia_chinensisPSS3000211.57437.46023physcomitrium_patensPp3c9_17810V3.152.882234.0852
CEY00_Acc05245actinidia_chinensisPSS3000212.89087.78936physcomitrium_patensPp3c8_4620V3.149.473729.8947
CEY00_Acc05245actinidia_chinensisPSS300028.118495.21119physcomitrium_patensPp3c1_270V3.154.612535.0554
CEY00_Acc05245actinidia_chinensisPSS300029.215586.30828zea_maysZm00001eb144750_P00142.966829.4118
CEY00_Acc05245actinidia_chinensisPSS3000270.981954.9643caenorhabditis_elegansF36A4.7.169.719853.9871
CEY00_Acc05245actinidia_chinensisPSS3000270.817354.9643drosophila_melanogasterFBpp007338768.415553.1002
CEY00_Acc05245actinidia_chinensisPSS3000274.382959.3527homo_sapiensENSP0000050219068.832554.9239
CEY00_Acc05245actinidia_chinensisPSS300028.557327.24081vitis_viniferaVitvi04g04403_P00182.105369.4737
CEY00_Acc05245actinidia_chinensisPSS300024.168953.62041vitis_viniferaVitvi15g04294_P00182.608771.7391
CEY00_Acc05245actinidia_chinensisPSS3000236.58832.9128ipomoea_trilobaitb12g02610.t191.244982.0793
CEY00_Acc05245actinidia_chinensisPSS3000289.358282.0625ipomoea_trilobaitb12g02600.t188.919281.6594
CEY00_Acc05245actinidia_chinensisPSS300026.308285.43061eragrostis_curvulaTVU0610178.231367.3469
CEY00_Acc05245actinidia_chinensisPSS3000260.778955.5677coffea_canephoraCDP1497086.292878.8941
CEY00_Acc05245actinidia_chinensisPSS3000214.317112.5617coffea_canephoraCDP1496988.474677.6271
CEY00_Acc05245actinidia_chinensisPSS3000214.317112.5617coffea_canephoraCDP0184188.474677.6271
CEY00_Acc05245actinidia_chinensisPSS3000276.796571.311coffea_canephoraCDP0184088.328182.0189
CEY00_Acc05245actinidia_chinensisPSS3000288.535481.7883fraxinus_excelsiorFRAEX38873_v2_000311040.1.cds89.418382.6039
CEY00_Acc05245actinidia_chinensisPSS3000228.140426.3302fraxinus_excelsiorFRAEX38873_v2_000152970.1.cds83.279277.9221
CEY00_Acc05245actinidia_chinensisPSS3000214.755913.5491fraxinus_excelsiorFRAEX38873_v2_000374390.1.cds89.666782.3333
CEY00_Acc05245actinidia_chinensisPSS3000232.419129.7312fraxinus_excelsiorFRAEX38873_v2_000241850.1.cds93.809586.0317
CEY00_Acc05245actinidia_chinensisPSS3000272.84757.9813ciona_savignyiENSCSAVP0000001421167.37753.6276
CEY00_Acc05245actinidia_chinensisPSS3000288.864581.1849arabidopsis_hallerig00329.t188.139380.5223
CEY00_Acc05245actinidia_chinensisPSS3000288.645181.2946eutrema_salsugineumESQ5351187.969580.675
CEY00_Acc05245actinidia_chinensisPSS3000285.902474.5474chara_brauniiGBG8686480.061369.4785
CEY00_Acc05245actinidia_chinensisPSS3000289.906781.514chenopodium_quinoaAUR62026224-RA:cds88.931180.6294
CEY00_Acc05245actinidia_chinensisPSS3000288.370880.0329chenopodium_quinoaAUR62026407-RA:cds88.322479.989
CEY00_Acc05245actinidia_chinensisPSS3000286.560677.0159selaginella_moellendorffiiEFJ1031487.81378.1302
CEY00_Acc05245actinidia_chinensisPSS3000285.408776.1382selaginella_moellendorffiiEFJ1955788.265378.6848
CEY00_Acc05245actinidia_chinensisPSS3000268.787751.9473cyanidioschyzon_merolaeCMR224CT68.93952.0616
CEY00_Acc05245actinidia_chinensisPSS3000271.585358.8042ostreococcus_lucimarinusABO9823779.283165.1276
CEY00_Acc05245actinidia_chinensisPSS3000245.364840.4827echinochloa_crusgalliscaffold215.164.cds84.907675.77
CEY00_Acc05245actinidia_chinensisPSS3000211.903510.3127eragrostis_tefEt_6A_047861.CDS86.111174.6032
CEY00_Acc05245actinidia_chinensisPSS3000237.246332.5837eragrostis_tefEt_6B_048661.CDS82.603472.2628
CEY00_Acc05245actinidia_chinensisPSS3000288.809780.8557camelina_sativaCsa11g005900.187.371879.5467
CEY00_Acc05245actinidia_chinensisPSS3000286.999579.3198camelina_sativaCsa10g006260.180.060672.9934
CEY00_Acc05245actinidia_chinensisPSS3000288.809780.8557camelina_sativaCsa12g007630.183.410675.9402
CEY00_Acc05245actinidia_chinensisPSS3000268.568352.6604saccharomyces_cerevisiaeYDL140C72.129355.3953
CEY00_Acc05245actinidia_chinensisPSS3000242.183233.0225galdieria_sulphurariaEME2613860.313747.2157
CEY00_Acc05245actinidia_chinensisPSS3000228.853522.4355galdieria_sulphurariaEME3090770.985255.1957
CEY00_Acc05245actinidia_chinensisPSS3000288.699980.9654arabidopsis_lyratafgenesh2_kg.7__493__AT4G35800.187.928280.261
CEY00_Acc05245actinidia_chinensisPSS300027.679656.80197citrus_clementinaESR4618185.889676.0736
CEY00_Acc05245actinidia_chinensisPSS3000288.096580.5815brassica_rapa_ro18A08p029330.1_BraROA.188.048280.5373
CEY00_Acc05245actinidia_chinensisPSS3000283.872775.8091brassica_rapa_ro18A01g500330.1_BraROA.157.201651.7022
CEY00_Acc05245actinidia_chinensisPSS3000290.071383.1048olea_europaeaOE9A096328C289.628882.6965
CEY00_Acc05245actinidia_chinensisPSS3000290.016582.6111olea_europaeaOE9A079612C489.525482.1604
CEY00_Acc05245actinidia_chinensisPSS3000288.699980.9654brassica_oleraceaBo3g155770.187.976180.3047
CEY00_Acc05245actinidia_chinensisPSS3000286.7878.9358brassica_oleraceaBo1g006210.186.02578.249
CEY00_Acc05245actinidia_chinensisPSS3000275.260668.1843brassica_oleraceaBo8g049760.185.111777.1092

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression