RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | CEY00_Acc05245 | Gene ID |
|
Accession |
- |
Symbol |
|
Alias |
- |
Full Name |
DNA-directed RNA polymerase II subunit 1 like
|
Status |
Confidence |
Length |
10028 bases |
Strand |
Plus strand |
Position |
LG5 : 1972288 - 1982315 |
RNA binding domain |
RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
PSS30002 |
RNA_pol_Rpb1_4 |
PF05000 |
1.8e-37 |
1 |
PSS30002 |
RNA_pol_Rpb1_1 |
PF04997 |
2.3e-108 |
2 |
PSS30002 |
RNA_pol_Rpb1_5 |
PF04998 |
1.9e-103 |
3 |
PSS30002 |
RNA_pol_Rpb1_2 |
PF00623 |
5.8e-70 |
4 |
PSS30002 |
RNA_pol_Rpb1_3 |
PF04983 |
6.1e-49 |
5 |
PSS30002 |
RNA_pol_Rpb1_6 |
PF04992 |
1.1e-63 |
6 |
PSS30002 |
RNA_pol_Rpb1_7 |
PF04990 |
1.1e-52 |
7 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
PSS30002 |
5926 |
1823aa |
PSS30002 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
CEY00_Acc05245 | actinidia_chinensis | PSS19843 | 89.5563 | 82.5216 | actinidia_chinensis | PSS30002 | 90.7844 | 83.6533 |
CEY00_Acc05245 | actinidia_chinensis | PSS17978 | 89.5563 | 82.4134 | actinidia_chinensis | PSS30002 | 90.7844 | 83.5436 |
CEY00_Acc05245 | actinidia_chinensis | PSR91523 | 36.3887 | 20.3997 | actinidia_chinensis | PSS30002 | 28.9632 | 16.237 |
CEY00_Acc05245 | actinidia_chinensis | PSS09783 | 28.2328 | 15.3736 | actinidia_chinensis | PSS30002 | 21.5579 | 11.7389 |
CEY00_Acc05245 | actinidia_chinensis | PSR95151 | 53.8901 | 34.7609 | actinidia_chinensis | PSS30002 | 41.4152 | 26.7142 |
CEY00_Acc05245 | actinidia_chinensis | PSS19139 | 39.9127 | 21.5721 | actinidia_chinensis | PSS30002 | 25.0686 | 13.5491 |
CEY00_Acc05245 | actinidia_chinensis | PSS26496 | 26.2611 | 14.5401 | actinidia_chinensis | PSS30002 | 29.1278 | 16.1273 |
CEY00_Acc05245 | actinidia_chinensis | PSS15654 | 37.6369 | 22.9971 | actinidia_chinensis | PSS30002 | 35.8201 | 21.887 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 64.3993 | 51.1245 | chondrus_crispus | CDF38608 | 65.0055 | 51.6058 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 70.8722 | 55.9517 | chlamydomonas_reinhardtii | PNW72140 | 71.3024 | 56.2914 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.6999 | 80.5266 | beta_vulgaris | KMT06928 | 88.9439 | 80.7481 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.6999 | 80.8009 | arabidopsis_thaliana | AT4G35800.1 | 87.9282 | 80.0979 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.7548 | 81.2397 | brassica_juncea | cds.BjuB03g48130S | 88.1744 | 80.7085 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 87.2189 | 78.9907 | brassica_juncea | cds.BjuA01g41190S | 84.5745 | 76.5957 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 86.6155 | 78.7164 | brassica_juncea | cds.BjuB05g60100S | 54.9408 | 49.9304 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.8645 | 81.1849 | brassica_juncea | cds.BjuA08g18160S | 56.211 | 51.3532 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 82.1722 | 74.6572 | brassica_napus | CDX69166 | 56.7424 | 51.553 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 75.3154 | 68.1843 | brassica_napus | CDY08876 | 84.8054 | 76.7758 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 85.4635 | 77.1256 | brassica_napus | CDX75527 | 57.3638 | 51.7673 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 86.5606 | 76.9611 | marchantia_polymorpha | PTQ35585 | 87.5208 | 77.8148 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.50247 | 7.07625 | malus_domestica_golden | mRNA:MD02G0107400 | 68.8889 | 57.3333 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 7.51509 | 6.03401 | glycine_max | KRH75173 | 71.7277 | 57.5916 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 3.89468 | 3.23642 | capsicum_annuum | PHT92688 | 84.5238 | 70.2381 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 90.565 | 83.3242 | capsicum_annuum | PHT91022 | 89.4366 | 82.286 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 13.4394 | 12.068 | capsicum_annuum | PHT74358 | 85.3659 | 76.6551 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 11.4646 | 9.87383 | capsicum_annuum | PHT92687 | 86.0082 | 74.0741 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 4.93692 | 4.16895 | capsicum_annuum | PHT78358 | 89.1089 | 75.2475 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 11.1355 | 9.98354 | capsicum_annuum | PHT72762 | 87.1245 | 78.1116 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 5.21119 | 4.33352 | capsicum_annuum | PHT88612 | 94.0594 | 78.2178 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.00878 | 7.07625 | capsicum_annuum | PHT94270 | 82.4859 | 72.8814 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 13.4394 | 11.9583 | capsicum_annuum | PHT83471 | 88.1295 | 78.4173 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 9.21558 | 7.40538 | capsicum_annuum | PHT76188 | 77.7778 | 62.5 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.3379 | 7.40538 | capsicum_annuum | PHT94271 | 83.5165 | 74.1758 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.11849 | 6.58256 | capsicum_annuum | PHT78357 | 64.0693 | 51.9481 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 15.5239 | 10.9709 | capsicum_annuum | PHT78914 | 50.1773 | 35.461 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 89.9616 | 83.0499 | solanum_tuberosum | PGSC0003DMT400009249 | 89.1789 | 82.3274 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 89.4679 | 81.9528 | sesamum_indicum | SIN_1015906.t | 82.9182 | 75.9532 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 91.3878 | 84.147 | sesamum_indicum | SIN_1004850.t | 90.1515 | 83.0087 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 90.4004 | 83.5436 | solanum_lycopersicum | Solyc02g083350.3.1 | 89.2741 | 82.5027 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 6.69227 | 5.26605 | solanum_lycopersicum | Solyc02g083220.2.1 | 87.7698 | 69.0648 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 6.91168 | 6.74712 | oryza_longistaminata | AMDW01030499.1_FGP001 | 96.9231 | 94.6154 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 51.3988 | 45.0905 | oryza_rufipogon | ORUFI08G03710.2 | 70.9848 | 62.2727 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 12.1229 | 7.7345 | physcomitrium_patens | Pp3c10_11540V3.1 | 53.3816 | 34.058 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 21.3933 | 12.6714 | physcomitrium_patens | Pp3c16_6060V3.1 | 50.5837 | 29.9611 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.00878 | 4.49808 | physcomitrium_patens | Pp3c1_10580V3.1 | 50.3448 | 28.2759 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 3.07186 | 1.86506 | physcomitrium_patens | PAC:32962516.CDS.1 | 61.5385 | 37.3626 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 16.2918 | 9.81898 | physcomitrium_patens | PAC:32927520.CDS.1 | 51.2953 | 30.9154 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 7.78936 | 4.88206 | physcomitrium_patens | Pp3c11_15730V3.1 | 55.4688 | 34.7656 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 5.65003 | 3.83982 | physcomitrium_patens | Pp3c5_18540V3.1 | 59.1954 | 40.2299 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.44761 | 5.37575 | physcomitrium_patens | Pp3c21_8550V3.1 | 52.381 | 33.3333 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 11.5743 | 7.46023 | physcomitrium_patens | Pp3c9_17810V3.1 | 52.8822 | 34.0852 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 12.8908 | 7.78936 | physcomitrium_patens | Pp3c8_4620V3.1 | 49.4737 | 29.8947 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.11849 | 5.21119 | physcomitrium_patens | Pp3c1_270V3.1 | 54.6125 | 35.0554 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 9.21558 | 6.30828 | zea_mays | Zm00001eb144750_P001 | 42.9668 | 29.4118 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 70.9819 | 54.9643 | caenorhabditis_elegans | F36A4.7.1 | 69.7198 | 53.9871 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 70.8173 | 54.9643 | drosophila_melanogaster | FBpp0073387 | 68.4155 | 53.1002 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 74.3829 | 59.3527 | homo_sapiens | ENSP00000502190 | 68.8325 | 54.9239 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 8.55732 | 7.24081 | vitis_vinifera | Vitvi04g04403_P001 | 82.1053 | 69.4737 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 4.16895 | 3.62041 | vitis_vinifera | Vitvi15g04294_P001 | 82.6087 | 71.7391 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 36.588 | 32.9128 | ipomoea_triloba | itb12g02610.t1 | 91.2449 | 82.0793 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 89.3582 | 82.0625 | ipomoea_triloba | itb12g02600.t1 | 88.9192 | 81.6594 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 6.30828 | 5.43061 | eragrostis_curvula | TVU06101 | 78.2313 | 67.3469 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 60.7789 | 55.5677 | coffea_canephora | CDP14970 | 86.2928 | 78.8941 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 14.3171 | 12.5617 | coffea_canephora | CDP14969 | 88.4746 | 77.6271 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 14.3171 | 12.5617 | coffea_canephora | CDP01841 | 88.4746 | 77.6271 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 76.7965 | 71.311 | coffea_canephora | CDP01840 | 88.3281 | 82.0189 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.5354 | 81.7883 | fraxinus_excelsior | FRAEX38873_v2_000311040.1.cds | 89.4183 | 82.6039 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 28.1404 | 26.3302 | fraxinus_excelsior | FRAEX38873_v2_000152970.1.cds | 83.2792 | 77.9221 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 14.7559 | 13.5491 | fraxinus_excelsior | FRAEX38873_v2_000374390.1.cds | 89.6667 | 82.3333 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 32.4191 | 29.7312 | fraxinus_excelsior | FRAEX38873_v2_000241850.1.cds | 93.8095 | 86.0317 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 72.847 | 57.9813 | ciona_savignyi | ENSCSAVP00000014211 | 67.377 | 53.6276 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.8645 | 81.1849 | arabidopsis_halleri | g00329.t1 | 88.1393 | 80.5223 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.6451 | 81.2946 | eutrema_salsugineum | ESQ53511 | 87.9695 | 80.675 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 85.9024 | 74.5474 | chara_braunii | GBG86864 | 80.0613 | 69.4785 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 89.9067 | 81.514 | chenopodium_quinoa | AUR62026224-RA:cds | 88.9311 | 80.6294 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.3708 | 80.0329 | chenopodium_quinoa | AUR62026407-RA:cds | 88.3224 | 79.989 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 86.5606 | 77.0159 | selaginella_moellendorffii | EFJ10314 | 87.813 | 78.1302 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 85.4087 | 76.1382 | selaginella_moellendorffii | EFJ19557 | 88.2653 | 78.6848 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 68.7877 | 51.9473 | cyanidioschyzon_merolae | CMR224CT | 68.939 | 52.0616 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 71.5853 | 58.8042 | ostreococcus_lucimarinus | ABO98237 | 79.2831 | 65.1276 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 45.3648 | 40.4827 | echinochloa_crusgalli | scaffold215.164.cds | 84.9076 | 75.77 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 11.9035 | 10.3127 | eragrostis_tef | Et_6A_047861.CDS | 86.1111 | 74.6032 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 37.2463 | 32.5837 | eragrostis_tef | Et_6B_048661.CDS | 82.6034 | 72.2628 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.8097 | 80.8557 | camelina_sativa | Csa11g005900.1 | 87.3718 | 79.5467 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 86.9995 | 79.3198 | camelina_sativa | Csa10g006260.1 | 80.0606 | 72.9934 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.8097 | 80.8557 | camelina_sativa | Csa12g007630.1 | 83.4106 | 75.9402 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 68.5683 | 52.6604 | saccharomyces_cerevisiae | YDL140C | 72.1293 | 55.3953 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 42.1832 | 33.0225 | galdieria_sulphuraria | EME26138 | 60.3137 | 47.2157 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 28.8535 | 22.4355 | galdieria_sulphuraria | EME30907 | 70.9852 | 55.1957 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.6999 | 80.9654 | arabidopsis_lyrata | fgenesh2_kg.7__493__AT4G35800.1 | 87.9282 | 80.261 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 7.67965 | 6.80197 | citrus_clementina | ESR46181 | 85.8896 | 76.0736 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.0965 | 80.5815 | brassica_rapa_ro18 | A08p029330.1_BraROA.1 | 88.0482 | 80.5373 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 83.8727 | 75.8091 | brassica_rapa_ro18 | A01g500330.1_BraROA.1 | 57.2016 | 51.7022 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 90.0713 | 83.1048 | olea_europaea | OE9A096328C2 | 89.6288 | 82.6965 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 90.0165 | 82.6111 | olea_europaea | OE9A079612C4 | 89.5254 | 82.1604 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 88.6999 | 80.9654 | brassica_oleracea | Bo3g155770.1 | 87.9761 | 80.3047 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 86.78 | 78.9358 | brassica_oleracea | Bo1g006210.1 | 86.025 | 78.249 |
CEY00_Acc05245 | actinidia_chinensis | PSS30002 | 75.2606 | 68.1843 | brassica_oleracea | Bo8g049760.1 | 85.1117 | 77.1092 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |