RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	CCACVL1_20238	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Aminoacyl-tRNA synthetase, class Ia
Status	Confidence	Length	3231 bases	Strand	Minus strand
Position	contig12358 : 48934 - 52164	RNA binding domain	tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
OMO67882	tRNA-synt_1g	PF09334	9.5e-13	1
OMO67882	tRNA-synt_1	PF00133	1.1e-199	2
OMO67882	Anticodon_1	PF08264	2.8e-36	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	OMO67882	3231	1076aa	OMO67882

Gene Model

Click here to download CCACVL1_20238's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download CCACVL1_20238's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CCACVL1_20238

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
CCACVL1_20238

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression