RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	C5167_020841	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	4169 bases	Strand	Plus strand
Position	2 : 197277733 - 197281901	RNA binding domain	GTP_EFTU , GTP_EFTU_D3 , MMR_HSR1 , GTP_EFTU_D2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
RZC52406	GTP_EFTU	PF00009	2.1e-54	1
RZC52406	GTP_EFTU_D3	PF03143	1.7e-35	2
RZC52406	MMR_HSR1	PF01926	0.00015	3
RZC52406	GTP_EFTU_D2	PF03144	2.8e-15	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	RZC52406	1433	447aa	RZC52406

Gene Model

Click here to download C5167_020841's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download C5167_020841's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
C5167_020841

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
C5167_020841

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression