RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	Bra030281	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT4G39280 (E=2e-227) \| phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
Status	Confidence	Length	3042 bases	Strand	Minus strand
Position	A04 : 9378837 - 9381878	RNA binding domain	PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra030281	PheRS_DBD1	PF18552	3.2e-07	1
Bra030281	PheRS_DBD3	PF18553	3.9e-12	2
Bra030281	tRNA-synt_2d	PF01409	1.6e-93	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra030281.1	1473	490aa	Bra030281.1-P

Gene Model

Click here to download Bra030281's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra030281's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra030281

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra030281

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression