RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	Bra021990	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT4G18730 (E=7e-093) RPL16B \| RPL16B; structural constituent of ribosome
Status	Confidence	Length	1207 bases	Strand	Minus strand
Position	A02 : 18251903 - 18253109	RNA binding domain	Ribosomal_L5 , Ribosomal_L5_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra021990	Ribosomal_L5	PF00281	1.8e-20	1
Bra021990	Ribosomal_L5_C	PF00673	1.2e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra021990.1	549	182aa	Bra021990.1-P

Gene Model

Click here to download Bra021990's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra021990's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra021990

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra021990

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression