RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Bra019156	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT4G25540 (E=0.0) MSH3, ATMSH3 \| MSH3 (Arabidopsis homolog of DNA mismatch repair protein MSH3); damaged DNA binding / mismatched DNA binding / protein binding
Status	Confidence	Length	5155 bases	Strand	Minus strand
Position	A03 : 26009980 - 26015134	RNA binding domain	MutS_II
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra019156	MutS_II	PF05188	8.2e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra019156.1	3255	1084aa	Bra019156.1-P

Gene Model

Click here to download Bra019156's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra019156's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra019156

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra019156

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression