RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Bra019115	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT4G26300 (E=6e-305) emb1027 \| emb1027 (embryo defective 1027); ATP binding / aminoacyl-tRNA ligase/ arginine-tRNA ligase/ nucleotide binding
Status	Confidence	Length	3174 bases	Strand	Minus strand
Position	A03 : 26270708 - 26273881	RNA binding domain	tRNA-synt_1d , Arg_tRNA_synt_N , DALR_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra019115	tRNA-synt_1d	PF00750	3.4e-119	1
Bra019115	Arg_tRNA_synt_N	PF03485	5.1e-14	2
Bra019115	DALR_1	PF05746	1.7e-31	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra019115.1	1773	590aa	Bra019115.1-P

Gene Model

Click here to download Bra019115's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra019115's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra019115

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra019115

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression