RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Bra016748	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT1G12920 (E=1e-245) ERF1-2 \| ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor
Status	Confidence	Length	1308 bases	Strand	Plus strand
Position	A08 : 19801670 - 19802977	RNA binding domain	eRF1_2 , eRF1_3 , eRF1_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra016748	eRF1_2	PF03464	3.4e-41	1
Bra016748	eRF1_3	PF03465	1.3e-37	2
Bra016748	eRF1_1	PF03463	7.6e-13	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra016748.1	1308	435aa	Bra016748.1-P

Gene Model

Click here to download Bra016748's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra016748's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra016748

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra016748

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression