RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Bra013342	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT4G18730 (E=2e-093) RPL16B \| RPL16B; structural constituent of ribosome
Status	Confidence	Length	950 bases	Strand	Plus strand
Position	A01 : 5104435 - 5105384	RNA binding domain	Ribosomal_L5 , Ribosomal_L5_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra013342	Ribosomal_L5	PF00281	1.8e-20	1
Bra013342	Ribosomal_L5_C	PF00673	1.2e-20	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra013342.1	549	182aa	Bra013342.1-P

Gene Model

Click here to download Bra013342's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra013342's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra013342

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra013342

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression