RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	Bra012470	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT1G25580 (E=3e-177) ANAC008 \| ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor
Status	Confidence	Length	8105 bases	Strand	Minus strand
Position	A07 : 7374367 - 7382471	RNA binding domain	LSM14 , SM-ATX , FDF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra012470	LSM14	PF12701	2.4e-31	1
Bra012470	SM-ATX	PF14438	5e-11	2
Bra012470	FDF	PF09532	2.4e-18	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra012470.1	3519	1172aa	Bra012470.1-P

Gene Model

Click here to download Bra012470's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra012470's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra012470

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra012470

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression