RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	Bra010749	Gene ID		Accession	-
Symbol		Alias	-	Full Name	AT3G46100 (E=2e-212) ATHRS1 \| ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase
Status	Confidence	Length	2338 bases	Strand	Minus strand
Position	A08 : 16247073 - 16249410	RNA binding domain	tRNA-synt_2d , tRNA-synt_His , HGTP_anticodon , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bra010749	tRNA-synt_2d	PF01409	4.5e-05	1
Bra010749	tRNA-synt_His	PF13393	2.3e-48	2
Bra010749	HGTP_anticodon	PF03129	2e-09	3
Bra010749	tRNA-synt_2b	PF00587	3.8e-11	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bra010749.1	1464	487aa	Bra010749.1-P

Gene Model

Click here to download Bra010749's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bra010749's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra010749

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bra010749

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression