Description

Ensembl ID Bo8g054140 Gene ID Accession -
Symbol Alias - Full Name FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR00310 /.../ small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Status Confidence Length 2933 bases Strand Minus strand
Position C8 : 17786072 - 17789004 RNA binding domain U3_assoc_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Bo8g054140 U3_assoc_6 PF08640 3.5e-28 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Bo8g054140.1 1923 640aa Bo8g054140.1

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Bo8g054140

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Bo8g054140

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression