RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	Bo5g020710	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1539 bases	Strand	Plus strand
Position	C5 : 7174405 - 7175943	RNA binding domain	Prp31_C , Nop
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
Bo5g020710	Prp31_C	PF09785	8.4e-40	1
Bo5g020710	Nop	PF01798	1.3e-66	2
Bo5g020710	Nop	PF01798	1.3e-66	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	Bo5g020710.1	1539	512aa	Bo5g020710.1

Gene Model

Click here to download Bo5g020710's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download Bo5g020710's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bo5g020710

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
Bo5g020710

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression