RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	BjuB04g32050S	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	6280 bases	Strand	Minus strand
Position	B04 : 42944272 - 42950551	RNA binding domain	PIN_4 , OB_Dis3 , RNB
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
cds	PIN_4	PF13638	6.5e-17	1
cds	OB_Dis3	PF17849	1.7e-18	2
cds	RNB	PF00773	7.3e-94	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	mRNA.BjuB04g32050S	2802	933aa	cds.BjuB04g32050S

Gene Model

Click here to download BjuB04g32050S's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download BjuB04g32050S's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BjuB04g32050S

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BjuB04g32050S

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression