RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	BVRB_6g137320	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein
Status	Confidence	Length	13645 bases	Strand	Plus strand
Position	6 : 12934976 - 12948620	RNA binding domain	Ribosomal_L18p
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KMT09026	Ribosomal_L18p	PF00861	1.4e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KMT09026	13645	374aa	KMT09026

Gene Model

Click here to download BVRB_6g137320's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download BVRB_6g137320's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_6g137320	beta_vulgaris	KMT17700	35.0877	15.2047	beta_vulgaris	KMT09026	16.0428	6.95187
BVRB_6g137320	beta_vulgaris	KMS99867	48.913	28.8043	beta_vulgaris	KMT09026	24.0642	14.1711
BVRB_6g137320	beta_vulgaris	KMT12447	50.8772	27.193	beta_vulgaris	KMT09026	15.508	8.28877
BVRB_6g137320	beta_vulgaris	KMT06230	41.0448	20.1493	beta_vulgaris	KMT09026	14.7059	7.21925
BVRB_6g137320	beta_vulgaris	KMT02323	43.0894	24.3902	beta_vulgaris	KMT09026	14.1711	8.02139
BVRB_6g137320	beta_vulgaris	KMT13531	45.9596	30.8081	beta_vulgaris	KMT09026	24.3316	16.3102

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_6g137320	beta_vulgaris	KMT09026	55.615	44.385	theobroma_cacao	EOY05688	60.4651	48.2558
BVRB_6g137320	beta_vulgaris	KMT09026	55.3476	37.9679	citrullus_lanatus	Cla97C05G086370.1	62.3494	42.7711
BVRB_6g137320	beta_vulgaris	KMT09026	58.0214	43.3155	ficus_carica	FCD_00009317-RA:cds	60.6145	45.2514
BVRB_6g137320	beta_vulgaris	KMT09026	55.8824	42.5134	prunus_dulcis	VVA20902	61.1111	46.4912
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_longistaminata	KN542226.1_FGP002	51.4451	36.9942
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_rufipogon	ORUFI10G14470.1	51.4451	36.9942
BVRB_6g137320	beta_vulgaris	KMT09026	54.8128	37.4332	lupinus_angustifolius	OIV94996	55.5556	37.9404
BVRB_6g137320	beta_vulgaris	KMT09026	58.0214	43.0481	manihot_esculenta	OAY53544	59.6154	44.2308
BVRB_6g137320	beta_vulgaris	KMT09026	55.615	38.5027	medicago_truncatula	AES93679	51.4851	35.6436
BVRB_6g137320	beta_vulgaris	KMT09026	55.615	38.7701	cucumis_melo	MELO3C022017.2.1	44.6352	31.1159
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_glaberrima	ORGLA07G0219100.1	55.1084	39.6285
BVRB_6g137320	beta_vulgaris	KMT09026	46.7914	33.1551	oryza_brachyantha	OB10G20840.1	49.0196	34.7339
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.4225	triticum_urartu	TuG1812G0100001908.01.T01.cds282645	50.1484	37.092
BVRB_6g137320	beta_vulgaris	KMT09026	52.9412	37.7005	vigna_unguiculata	Vigun02g194900.1.v1.2.CDS.1	59.4595	42.3423
BVRB_6g137320	beta_vulgaris	KMT09026	33.1551	26.2032	glycine_max	KRH77856	70.0565	55.3672
BVRB_6g137320	beta_vulgaris	KMT09026	52.9412	37.9679	glycine_max	KRH27636	60.1824	43.1611
BVRB_6g137320	beta_vulgaris	KMT09026	53.4759	38.2353	vigna_radiata	Vradi11g00690.1	52.7704	37.7309
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.4225	triticum_turgidum	TRITD1Bv1G104010.1	52.1605	38.5802
BVRB_6g137320	beta_vulgaris	KMT09026	44.9198	33.4225	triticum_turgidum	TRITD1Av1G102970.1	51.8519	38.5802
BVRB_6g137320	beta_vulgaris	KMT09026	55.8824	42.5134	prunus_persica	ONI26267	61.1111	46.4912
BVRB_6g137320	beta_vulgaris	KMT09026	55.8824	44.1176	quercus_lobata	QL06p002449:mrna:CDS:1	60.7558	47.9651
BVRB_6g137320	beta_vulgaris	KMT09026	40.9091	32.3529	quercus_lobata	QL02p103284:mrna	73.5577	58.1731
BVRB_6g137320	beta_vulgaris	KMT09026	55.615	41.4439	ipomoea_triloba	itb04g15480.t1	57.3003	42.6997
BVRB_6g137320	beta_vulgaris	KMT09026	27.5401	21.123	ipomoea_triloba	itb11g13290.t1	61.6766	47.3054
BVRB_6g137320	beta_vulgaris	KMT09026	51.8717	35.8289	helianthus_annuus	CDS:HanXRQr2_Chr03g0100621.1	60.0619	41.4861
BVRB_6g137320	beta_vulgaris	KMT09026	33.9572	21.3904	cynara_cardunculus	KVI01689	47.037	29.6296
BVRB_6g137320	beta_vulgaris	KMT09026	52.139	35.0267	cynara_cardunculus	KVH42608	46.2085	31.0427
BVRB_6g137320	beta_vulgaris	KMT09026	17.3797	13.1016	cynara_cardunculus	KVE30686	81.25	61.25
BVRB_6g137320	beta_vulgaris	KMT09026	31.016	22.9947	cynara_cardunculus	KVI01688	51.5556	38.2222
BVRB_6g137320	beta_vulgaris	KMT09026	58.5561	43.8503	populus_trichocarpa	Potri.008G153100.1.v4.1	59.5109	44.5652
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_indica	BGIOSGA031667-PA	55.1084	39.6285
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.1551	lolium_perenne	cds.KYUSt_chr1.18167	40.8213	29.9517
BVRB_6g137320	beta_vulgaris	KMT09026	17.1123	8.82353	homo_sapiens	ENSP00000356001	35.5556	18.3333
BVRB_6g137320	beta_vulgaris	KMT09026	55.615	37.4332	pisum_sativum	Psat4g210560.1.cds1	58.5915	39.4366
BVRB_6g137320	beta_vulgaris	KMT09026	14.7059	6.41711	caenorhabditis_elegans	D2007.4.1	32.3529	14.1176
BVRB_6g137320	beta_vulgaris	KMT09026	49.1979	36.8984	brassica_juncea	cds.BjuB07g40980S	58.4127	43.8095
BVRB_6g137320	beta_vulgaris	KMT09026	50.8021	38.5027	brassica_juncea	cds.BjuA01g12300S	60.7029	46.0064
BVRB_6g137320	beta_vulgaris	KMT09026	17.9144	11.4973	drosophila_melanogaster	FBpp0086965	36.0215	23.1183
BVRB_6g137320	beta_vulgaris	KMT09026	47.0588	34.492	leersia_perrieri	LPERR10G10150.1	53.6585	39.3293
BVRB_6g137320	beta_vulgaris	KMT09026	45.7219	33.9572	setaria_viridis	TKV93279	52.1341	38.7195
BVRB_6g137320	beta_vulgaris	KMT09026	41.7112	30.4813	malus_domestica_golden	mRNA:MD16G0171100	62.9032	45.9677
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	40.9091	malus_domestica_golden	CDS:MD13G0170100.1	61.5607	44.2197
BVRB_6g137320	beta_vulgaris	KMT09026	56.1497	43.8503	quercus_suber	cds-POF19013.1	61.0465	47.6744
BVRB_6g137320	beta_vulgaris	KMT09026	44.9198	35.0267	quercus_suber	cds-POF20163.1	70.5882	55.042
BVRB_6g137320	beta_vulgaris	KMT09026	44.9198	35.0267	quercus_suber	cds-POF07227.1	70.5882	55.042
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_nivara	ONIVA10G15090.1	51.4451	36.9942
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	42.7808	citrus_clementina	ESR33177	59.6639	44.8179
BVRB_6g137320	beta_vulgaris	KMT09026	45.7219	33.9572	setaria_italica	KQK88653	52.6154	39.0769
BVRB_6g137320	beta_vulgaris	KMT09026	51.0695	36.8984	arabidopsis_halleri	g22725.t1.cds1	60.0629	43.3962
BVRB_6g137320	beta_vulgaris	KMT09026	44.385	32.3529	avena_sativa_ot3098	cds.AVESA.00001b.r3.1Dg0000541.2	40.6863	29.6569
BVRB_6g137320	beta_vulgaris	KMT09026	43.8503	32.6203	avena_sativa_ot3098	cds.AVESA.00001b.r3.1Ag0000576.1	59.6364	44.3636
BVRB_6g137320	beta_vulgaris	KMT09026	44.6524	33.1551	avena_sativa_ot3098	cds.AVESA.00001b.r3.1Cg0001164.1	53.1847	39.4904
BVRB_6g137320	beta_vulgaris	KMT09026	48.9305	33.9572	asparagus_officinalis	ONK71106	54.7904	38.024
BVRB_6g137320	beta_vulgaris	KMT09026	57.2192	43.8503	eucalyptus_grandis	KCW60754	60.7955	46.5909
BVRB_6g137320	beta_vulgaris	KMT09026	58.5561	43.5829	fraxinus_excelsior	FRAEX38873_v2_000281320.1.cds1	57.0312	42.4479
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.1551	aegilops_tauschii	AET1Gv20412300.6	50.2976	36.9048
BVRB_6g137320	beta_vulgaris	KMT09026	46.7914	33.6898	oryza_meridionalis	OMERI10G10430.1	38.8027	27.9379
BVRB_6g137320	beta_vulgaris	KMT09026	50.2674	35.5615	amborella_trichopoda	ERN11156	52.6611	37.2549
BVRB_6g137320	beta_vulgaris	KMT09026	45.4545	33.9572	sorghum_bicolor	KXG25632	52.795	39.441
BVRB_6g137320	beta_vulgaris	KMT09026	56.6845	43.3155	corchorus_capsularis	OMO80745	51.7073	39.5122
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	43.3155	corchorus_capsularis	OMO80748	62.6471	47.6471
BVRB_6g137320	beta_vulgaris	KMT09026	80.2139	68.7166	chenopodium_quinoa	AUR62007971-RA:cds	53.286	45.6483
BVRB_6g137320	beta_vulgaris	KMT09026	56.6845	44.1176	juglans_regia	cds.Jr07_20970_p1	57.7657	44.9591
BVRB_6g137320	beta_vulgaris	KMT09026	15.7754	13.1016	brassica_oleracea	Bo5g096980.1	57.2816	47.5728
BVRB_6g137320	beta_vulgaris	KMT09026	49.7326	37.4332	brassica_oleracea	Bo1g105070.1	59.4249	44.7284
BVRB_6g137320	beta_vulgaris	KMT09026	59.893	44.9198	coffea_canephora	CDO99061	58.3333	43.75
BVRB_6g137320	beta_vulgaris	KMT09026	38.2353	25.1337	digitaria_exilis	Dexi9A01G0020240.1:cds	25.3097	16.6372
BVRB_6g137320	beta_vulgaris	KMT09026	56.6845	41.9786	cannabis_sativa_female	cds.evm.model.07.1199	56.2334	41.6446
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.492	eragrostis_curvula	TVU30322	53.1343	38.5075
BVRB_6g137320	beta_vulgaris	KMT09026	51.8717	37.9679	eutrema_salsugineum	ESQ47615	61.7834	45.2229
BVRB_6g137320	beta_vulgaris	KMT09026	44.385	33.1551	avena_sativa_sang	AVESA.00010b.r2.1CG0093460.1.CDS	52.8662	39.4904
BVRB_6g137320	beta_vulgaris	KMT09026	43.8503	32.6203	avena_sativa_sang	AVESA.00010b.r2.1AG0064920.1.CDS.1	59.6364	44.3636
BVRB_6g137320	beta_vulgaris	KMT09026	44.385	32.3529	avena_sativa_sang	AVESA.00010b.r2.1DG0183760.1.CDS.1	55.1495	40.1993
BVRB_6g137320	beta_vulgaris	KMT09026	51.8717	36.0963	trifolium_pratense	Tp57577_TGAC_v2_mRNA39288	60.625	42.1875
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_barthii	OBART10G13690.1	51.4451	36.9942
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	41.7112	solanum_lycopersicum	Solyc03g005180.1.1.1	59.3315	43.454
BVRB_6g137320	beta_vulgaris	KMT09026	52.9412	37.9679	vigna_angularis	KOM27572	59.4595	42.6426
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	34.492	panicum_hallii	PUZ38569	51.8405	39.5706
BVRB_6g137320	beta_vulgaris	KMT09026	52.139	38.2353	cajanus_cajan	C.cajan_15836.t.cds1	58.9124	43.2024
BVRB_6g137320	beta_vulgaris	KMT09026	50.8021	38.5027	brassica_rapa_ro18	A01p044020.1_BraROA.1.cds1	60.7029	46.0064
BVRB_6g137320	beta_vulgaris	KMT09026	54.5455	40.3743	rosa_chinensis	PRQ38636	60.355	44.6746
BVRB_6g137320	beta_vulgaris	KMT09026	49.1979	35.2941	musa_acuminata	Ma04_p28560.1	52.8736	37.931
BVRB_6g137320	beta_vulgaris	KMT09026	47.0588	36.631	corymbia_citriodora	cds-KAF8016835.1	73.029	56.8465
BVRB_6g137320	beta_vulgaris	KMT09026	45.9893	34.7594	eragrostis_tef	Et_1A_005895.CDS	51.1905	38.6905
BVRB_6g137320	beta_vulgaris	KMT09026	45.7219	33.9572	eragrostis_tef	Et_1B_009678.CDS1	49.1379	36.4943
BVRB_6g137320	beta_vulgaris	KMT09026	47.0588	33.4225	oryza_punctata	OPUNC10G12110.1	44.557	31.6456
BVRB_6g137320	beta_vulgaris	KMT09026	56.6845	41.1765	daucus_carota	KZM87027	56.2334	40.8488
BVRB_6g137320	beta_vulgaris	KMT09026	58.2888	42.5134	pistacia_vera	cds-EVM0028964.1	60.221	43.9227
BVRB_6g137320	beta_vulgaris	KMT09026	44.9198	33.6898	echinochloa_crusgalli	scaffold165.68.cds	52.3364	39.2523
BVRB_6g137320	beta_vulgaris	KMT09026	17.3797	6.41711	ciona_savignyi	ENSCSAVP00000002878	29.2793	10.8108
BVRB_6g137320	beta_vulgaris	KMT09026	45.7219	33.4225	brachypodium_distachyon	PNT67576	54.2857	39.6825
BVRB_6g137320	beta_vulgaris	KMT09026	51.3369	38.2353	arabidopsis_lyrata	fgenesh2_kg.3__2464__AT3G22450.1	61.7363	45.9807
BVRB_6g137320	beta_vulgaris	KMT09026	44.385	32.8877	triticum_dicoccoides	TRIDC1BG029530.3	51.0769	37.8462
BVRB_6g137320	beta_vulgaris	KMT09026	45.4545	33.4225	triticum_dicoccoides	TRIDC1AG024360.1	48.8506	35.9195
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_sativa	Os10t0484400-02	55.1084	39.6285
BVRB_6g137320	beta_vulgaris	KMT09026	56.6845	42.246	solanum_tuberosum	PGSC0003DMT400097633	58.5635	43.6464
BVRB_6g137320	beta_vulgaris	KMT09026	50.2674	37.4332	arabidopsis_thaliana	AT3G22450.1	60.4502	45.0161
BVRB_6g137320	beta_vulgaris	KMT09026	43.8503	33.6898	zea_mays	Zm00001eb360500_P002	49.1018	37.7246
BVRB_6g137320	beta_vulgaris	KMT09026	60.1604	44.9198	actinidia_chinensis	PSS01437	60.4839	45.1613
BVRB_6g137320	beta_vulgaris	KMT09026	52.4064	39.3048	lactuca_sativa	cds-PLY68612.1	56.1605	42.1203
BVRB_6g137320	beta_vulgaris	KMT09026	45.4545	33.6898	triticum_aestivum	TraesCS1B02G176500.1	52.4691	38.8889
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.6898	triticum_aestivum	TraesCS1A02G160100.1	52.1605	38.8889
BVRB_6g137320	beta_vulgaris	KMT09026	45.1872	33.1551	triticum_aestivum	TraesCS1D02G157300.1	52.1605	38.2716
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	42.5134	nicotiana_attenuata	OIS96230	58.5165	43.6813
BVRB_6g137320	beta_vulgaris	KMT09026	53.2086	37.1658	phaseolus_vulgaris	ESW29127	59.5808	41.6168
BVRB_6g137320	beta_vulgaris	KMT09026	49.4652	37.1658	brassica_napus	CDY46316	59.6774	44.8387
BVRB_6g137320	beta_vulgaris	KMT09026	50	37.9679	brassica_napus	CDY34251	60.3226	45.8064
BVRB_6g137320	beta_vulgaris	KMT09026	15.7754	13.1016	brassica_napus	CDY38315	64.1304	53.2609
BVRB_6g137320	beta_vulgaris	KMT09026	53.2086	36.8984	arabis_alpina	KFK39538	59.7598	41.4414
BVRB_6g137320	beta_vulgaris	KMT09026	55.8824	37.9679	cucumis_sativus	KGN52493	62.5749	42.515
BVRB_6g137320	beta_vulgaris	KMT09026	58.0214	45.1872	corylus_avellana	Cav01g09490.t1	53.317	41.5233
BVRB_6g137320	beta_vulgaris	KMT09026	56.9519	41.4439	capsicum_annuum	PHT61234	59.8315	43.5393
BVRB_6g137320	beta_vulgaris	KMT09026	47.5936	34.2246	oryza_glumipatula	OGLUM10G13520.1	51.4451	36.9942
BVRB_6g137320	beta_vulgaris	KMT09026	45.4545	33.1551	saccharum_spontaneum	Sspon.06G0001700-1A-mRNA-1:cds	53.6278	39.1167
BVRB_6g137320	beta_vulgaris	KMT09026	21.9251	14.1711	saccharum_spontaneum	Sspon.06G0001700-4D-mRNA-1	14.9362	9.65392
BVRB_6g137320	beta_vulgaris	KMT09026	43.0481	31.8182	saccharum_spontaneum	Sspon.06G0001700-3C-mRNA-1	47.4926	35.1032
BVRB_6g137320	beta_vulgaris	KMT09026	48.6631	36.3636	nymphaea_colorata	NC5G0050780.1:cds	56.3467	42.1053
BVRB_6g137320	beta_vulgaris	KMT09026	57.2192	46.2567	vitis_vinifera	Vitvi05g00504_P001	61.4943	49.7126
BVRB_6g137320	beta_vulgaris	KMT09026	51.6043	37.7005	camelina_sativa	Csa19g031700.1.cds1	59.3846	43.3846
BVRB_6g137320	beta_vulgaris	KMT09026	50.8021	37.4332	camelina_sativa	Csa01g025710.1.cds1	58.2822	42.9448
BVRB_6g137320	beta_vulgaris	KMT09026	50.8021	37.7005	camelina_sativa	Csa15g038080.1.cds1	59.5611	44.2006
BVRB_6g137320	beta_vulgaris	KMT09026	57.2192	40.3743	sesamum_indicum	SIN_1016354.t.cds1	58.9532	41.5978
BVRB_6g137320	beta_vulgaris	KMT09026	54.0107	39.5722	kalanchoe_fedtschenkoi	Kaladp0033s0237.1.v1.1.CDS.1	58.046	42.5287
BVRB_6g137320	beta_vulgaris	KMT09026	35.5615	23.262	kalanchoe_fedtschenkoi	Kaladp0045s0443.1.v1.1	53.629	35.0806
BVRB_6g137320	beta_vulgaris	KMT09026	51.3369	33.9572	dioscorea_rotundata	DRNTG_06124.2	52.8926	34.9862
BVRB_6g137320	beta_vulgaris	KMT09026	45.7219	33.4225	secale_cereale	SECCE1Rv1G0025710.1	52.7778	38.5802

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression