RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	BVRB_5g116710	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Protein NUCLEAR FUSION DEFECTIVE 2
Status	Confidence	Length	2849 bases	Strand	Minus strand
Position	5 : 45778268 - 45781116	RNA binding domain	Ribonucleas_3_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KMT10547	Ribonucleas_3_3	PF14622	4.4e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KMT10547	823	187aa	KMT10547

Gene Model

Click here to download BVRB_5g116710's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download BVRB_5g116710's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_5g116710

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_5g116710	beta_vulgaris	KMT10547	67.3797	51.3369	theobroma_cacao	EOY20666	66.6667	50.7937
BVRB_5g116710	beta_vulgaris	KMT10547	60.4278	45.9893	ficus_carica	FCD_00010790-RA:cds	60.4278	45.9893
BVRB_5g116710	beta_vulgaris	KMT10547	67.3797	54.0107	prunus_dulcis	VVA16932	68.1081	54.5946
BVRB_5g116710	beta_vulgaris	KMT10547	29.9465	20.8556	oryza_longistaminata	KN538745.1_FGP023	47.8632	33.3333
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	34.2246	oryza_rufipogon	ORUFI03G43220.1	56.8182	36.3636
BVRB_5g116710	beta_vulgaris	KMT10547	67.3797	55.0802	lupinus_angustifolius	OIW00337	68.4783	55.9783
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	52.4064	manihot_esculenta	OAY47746	64.8936	52.1277
BVRB_5g116710	beta_vulgaris	KMT10547	68.4492	51.8717	medicago_truncatula	AES91139	71.9101	54.4944
BVRB_5g116710	beta_vulgaris	KMT10547	35.2941	23.5294	oryza_glaberrima	ORGLA03G0383100.1	24.6269	16.4179
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	34.2246	triticum_urartu	TuG1812G0400003952.01.T01.cds447130	55.5556	35.5556
BVRB_5g116710	beta_vulgaris	KMT10547	67.9144	55.0802	vigna_unguiculata	Vigun03g326400.1.v1.2	70.9497	57.5419
BVRB_5g116710	beta_vulgaris	KMT10547	68.4492	57.2192	glycine_max	KRH03329	68.0851	56.9149
BVRB_5g116710	beta_vulgaris	KMT10547	68.4492	55.615	vigna_radiata	Vradi07g14930.1	71.5084	58.1006
BVRB_5g116710	beta_vulgaris	KMT10547	55.615	36.3636	triticum_turgidum	TRITD5Bv1G250160.1	56.2162	36.7568
BVRB_5g116710	beta_vulgaris	KMT10547	67.3797	53.4759	prunus_persica	ONI08410	68.1081	54.0541
BVRB_5g116710	beta_vulgaris	KMT10547	64.7059	55.0802	quercus_lobata	QL10p013655:mrna	63.3508	53.9267
BVRB_5g116710	beta_vulgaris	KMT10547	64.7059	49.7326	ipomoea_triloba	itb06g25660.t1	68.3616	52.5424
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	48.1283	helianthus_annuus	mRNA:HanXRQr2_Chr02g0051941	55.4545	40.9091
BVRB_5g116710	beta_vulgaris	KMT10547	63.6364	51.3369	cynara_cardunculus	KVH98171	59.5	48
BVRB_5g116710	beta_vulgaris	KMT10547	66.3102	50.2674	populus_trichocarpa	Potri.012G078400.1.v4.1	69.2737	52.514
BVRB_5g116710	beta_vulgaris	KMT10547	64.1711	49.1979	populus_trichocarpa	Potri.015G073900.2.v4.1	68.9655	52.8736
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	34.2246	oryza_indica	BGIOSGA009413-PA	56.25	36.3636
BVRB_5g116710	beta_vulgaris	KMT10547	36.8984	21.3904	lolium_perenne	cds.KYUSt_chr4.1159	39.8844	23.1214
BVRB_5g116710	beta_vulgaris	KMT10547	68.4492	51.3369	pisum_sativum	Psat4g057000.1.cds	71.1111	53.3333
BVRB_5g116710	beta_vulgaris	KMT10547	66.8449	52.4064	brassica_juncea	cds.BjuB04g20110S	66.1376	51.8519
BVRB_5g116710	beta_vulgaris	KMT10547	62.5668	51.3369	brassica_juncea	cds.BjuA09g26300S	62.5668	51.3369
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	35.8289	leersia_perrieri	LPERR03G35380.1	56.5714	38.2857
BVRB_5g116710	beta_vulgaris	KMT10547	51.3369	32.0856	setaria_viridis	TKV90103	51.8919	32.4324
BVRB_5g116710	beta_vulgaris	KMT10547	67.3797	51.8717	malus_domestica_golden	mRNA:MD14G0159800	68.1081	52.4324
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	55.0802	quercus_suber	cds-POE67642.1	54.4643	45.9821
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	34.2246	oryza_nivara	ONIVA03G43530.1	56.8182	36.3636
BVRB_5g116710	beta_vulgaris	KMT10547	63.6364	53.4759	citrus_clementina	ESR53019	64.6739	54.3478
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	50.2674	arabidopsis_halleri	g26693.t1	64.2105	49.4737
BVRB_5g116710	beta_vulgaris	KMT10547	37.9679	21.9251	selaginella_moellendorffii	EFJ30076	55.4688	32.0312
BVRB_5g116710	beta_vulgaris	KMT10547	36.8984	21.3904	selaginella_moellendorffii	EFJ09022	54.3307	31.4961
BVRB_5g116710	beta_vulgaris	KMT10547	66.8449	48.1283	fraxinus_excelsior	FRAEX38873_v2_000071110.1.cds	67.9348	48.913
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	35.8289	aegilops_tauschii	AET5Gv21228200.2	52.0833	34.8958
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	34.2246	oryza_meridionalis	OMERI03G38160.1	55.2486	35.3591
BVRB_5g116710	beta_vulgaris	KMT10547	55.615	41.1765	amborella_trichopoda	ERM99494	59.0909	43.75
BVRB_5g116710	beta_vulgaris	KMT10547	51.8717	33.6898	sorghum_bicolor	KXG37098	53.0055	34.4262
BVRB_5g116710	beta_vulgaris	KMT10547	58.2888	43.8503	corchorus_capsularis	OMO87776	55.8974	42.0513
BVRB_5g116710	beta_vulgaris	KMT10547	66.3102	51.3369	corchorus_capsularis	OMO81548	65.6085	50.7937
BVRB_5g116710	beta_vulgaris	KMT10547	85.5615	77.0053	chenopodium_quinoa	AUR62008240-RA:cds	85.1064	76.5957
BVRB_5g116710	beta_vulgaris	KMT10547	70.0535	60.4278	chenopodium_quinoa	AUR62029952-RA:cds	52.8226	45.5645
BVRB_5g116710	beta_vulgaris	KMT10547	58.8235	48.6631	chenopodium_quinoa	AUR62039786-RA:cds	43.8247	36.255
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	44.385	chenopodium_quinoa	AUR62040474-RA:cds	46.5116	38.6047
BVRB_5g116710	beta_vulgaris	KMT10547	64.7059	52.4064	juglans_regia	cds.Jr02_03800_p1	54.0179	43.75
BVRB_5g116710	beta_vulgaris	KMT10547	64.7059	52.4064	juglans_regia	cds.Jr02_03790_p1	53.5398	43.3628
BVRB_5g116710	beta_vulgaris	KMT10547	41.7112	33.1551	brassica_oleracea	Bo7g050160.1	63.4146	50.4065
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	50.8021	brassica_oleracea	Bo5g051800.1	64.5503	50.2645
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	33.6898	digitaria_exilis	Dexi9B01G0000570.1:cds	53.7634	33.871
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	33.1551	digitaria_exilis	Dexi9A01G0000650.1:cds	53.7634	33.3333
BVRB_5g116710	beta_vulgaris	KMT10547	65.7754	53.4759	cannabis_sativa_female	cds.evm.model.03.434	66.129	53.7634
BVRB_5g116710	beta_vulgaris	KMT10547	54.5455	34.7594	eragrostis_curvula	TVU44230	58.6207	37.3563
BVRB_5g116710	beta_vulgaris	KMT10547	64.7059	49.1979	eutrema_salsugineum	ESQ34156	64.3617	48.9362
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	35.8289	avena_sativa_sang	AVESA.00010b.r2.7CG0715640.1.CDS.1	52.6596	35.6383
BVRB_5g116710	beta_vulgaris	KMT10547	65.7754	49.1979	trifolium_pratense	Tp57577_TGAC_v2_mRNA38736	70.6897	52.8736
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	34.2246	oryza_barthii	OBART03G41430.1	56.25	36.3636
BVRB_5g116710	beta_vulgaris	KMT10547	60.4278	47.0588	solanum_lycopersicum	Solyc03g114120.3.1	60.1064	46.8085
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	34.2246	hordeum_vulgare	HORVU.MOREX.r3.5HG0536120.1.CDS1	56.8966	36.7816
BVRB_5g116710	beta_vulgaris	KMT10547	67.9144	54.0107	vigna_angularis	KOM32826	70.9497	56.4246
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	32.0856	panicum_hallii	PUZ36016	54.0541	32.4324
BVRB_5g116710	beta_vulgaris	KMT10547	50.2674	39.5722	cajanus_cajan	C.cajan_02458.t.cds1	77.0492	60.6557
BVRB_5g116710	beta_vulgaris	KMT10547	62.5668	50.8021	brassica_rapa_ro18	A09p050200.1_BraROA.1	63.2432	51.3514
BVRB_5g116710	beta_vulgaris	KMT10547	67.9144	53.4759	rosa_chinensis	PRQ17342	68.6487	54.0541
BVRB_5g116710	beta_vulgaris	KMT10547	37.9679	22.9947	eragrostis_tef	Et_4A_031949.CDS1	61.7391	37.3913
BVRB_5g116710	beta_vulgaris	KMT10547	40.107	24.0642	eragrostis_tef	Et_4B_036562.CDS1	61.9835	37.1901
BVRB_5g116710	beta_vulgaris	KMT10547	36.3636	24.0642	oryza_punctata	OPUNC03G38480.1	36.5591	24.1935
BVRB_5g116710	beta_vulgaris	KMT10547	50.8021	41.7112	daucus_carota	KZM81083	77.8689	63.9344
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	51.3369	pistacia_vera	cds-EVM0007420.1	64.8936	51.0638
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	51.3369	pistacia_vera	cds-EVM0006715.1	65.2406	51.3369
BVRB_5g116710	beta_vulgaris	KMT10547	49.7326	33.1551	echinochloa_crusgalli	scaffold253.151.cds	52.2472	34.8315
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	33.1551	echinochloa_crusgalli	scaffold397.37.cds	52.9412	33.1551
BVRB_5g116710	beta_vulgaris	KMT10547	55.0802	34.2246	brachypodium_distachyon	KQK12028	53.6458	33.3333
BVRB_5g116710	beta_vulgaris	KMT10547	66.3102	50.8021	arabidopsis_lyrata	fgenesh2_kg.1__2857__AT1G24450.1	65.2632	50
BVRB_5g116710	beta_vulgaris	KMT10547	55.615	36.3636	triticum_dicoccoides	TRIDC5BG082190.1	55.0265	35.9788
BVRB_5g116710	beta_vulgaris	KMT10547	54.0107	34.2246	oryza_sativa	Os03t0854400-01	56.7416	35.9551
BVRB_5g116710	beta_vulgaris	KMT10547	61.4973	46.5241	solanum_tuberosum	PGSC0003DMT400062924	61.1702	46.2766
BVRB_5g116710	beta_vulgaris	KMT10547	66.3102	50.8021	arabidopsis_thaliana	AT1G24450.1	64.9215	49.7382
BVRB_5g116710	beta_vulgaris	KMT10547	51.8717	34.2246	zea_mays	Zm00001eb210540_P001	54.1899	35.7542
BVRB_5g116710	beta_vulgaris	KMT10547	71.6578	52.4064	actinidia_chinensis	PSR96690	58.7719	42.9825
BVRB_5g116710	beta_vulgaris	KMT10547	72.1925	52.4064	actinidia_chinensis	PSR95863	72.973	52.973
BVRB_5g116710	beta_vulgaris	KMT10547	64.1711	46.5241	olea_europaea	OE9A094588C1	64.8649	47.027
BVRB_5g116710	beta_vulgaris	KMT10547	65.7754	52.4064	lactuca_sativa	cds-PLY84504.1	66.8478	53.2609
BVRB_5g116710	beta_vulgaris	KMT10547	52.9412	35.8289	triticum_aestivum	TraesCS5D02G553400.1.cds1	55	37.2222
BVRB_5g116710	beta_vulgaris	KMT10547	55.615	36.3636	triticum_aestivum	TraesCS5B02G556100.1.cds1	56.2162	36.7568
BVRB_5g116710	beta_vulgaris	KMT10547	66.8449	54.0107	phaseolus_vulgaris	ESW27399	69.8324	56.4246
BVRB_5g116710	beta_vulgaris	KMT10547	65.2406	51.8717	brassica_napus	CDX84946	64.5503	51.3228
BVRB_5g116710	beta_vulgaris	KMT10547	41.7112	33.1551	brassica_napus	CDY03891	60.9375	48.4375
BVRB_5g116710	beta_vulgaris	KMT10547	62.0321	50.8021	brassica_napus	CDY27593	62.0321	50.8021
BVRB_5g116710	beta_vulgaris	KMT10547	63.6364	48.6631	arabis_alpina	KFK44503	61.9792	47.3958
BVRB_5g116710	beta_vulgaris	KMT10547	59.3583	51.8717	corylus_avellana	Cav03g04420.t1	59.0426	51.5957
BVRB_5g116710	beta_vulgaris	KMT10547	59.893	48.1283	capsicum_annuum	PHT57492	52.5822	42.2535
BVRB_5g116710	beta_vulgaris	KMT10547	50.8021	38.5027	capsicum_annuum	PHT88157	29.7806	22.5705
BVRB_5g116710	beta_vulgaris	KMT10547	53.4759	34.2246	oryza_glumipatula	OGLUM03G41280.1	56.8182	36.3636
BVRB_5g116710	beta_vulgaris	KMT10547	48.6631	32.0856	saccharum_spontaneum	Sspon.01G0063130-1P-mRNA-1:cds	34.4697	22.7273
BVRB_5g116710	beta_vulgaris	KMT10547	59.893	41.1765	nymphaea_colorata	NC8G0211120.1:cds	58.0311	39.8964
BVRB_5g116710	beta_vulgaris	KMT10547	70.5882	58.2888	vitis_vinifera	Vitvi17g00777_P001	72.1311	59.5628
BVRB_5g116710	beta_vulgaris	KMT10547	66.8449	52.4064	prunus_avium	Pav_sc0001309.1_g570.1.mk:mrna	66.8449	52.4064
BVRB_5g116710	beta_vulgaris	KMT10547	63.1016	48.6631	camelina_sativa	Csa03g030290.1	63.4409	48.9247
BVRB_5g116710	beta_vulgaris	KMT10547	66.3102	51.3369	camelina_sativa	Csa17g035740.1	65.6085	50.7937
BVRB_5g116710	beta_vulgaris	KMT10547	68.4492	52.4064	sesamum_indicum	SIN_1020465.t	68.0851	52.1277
BVRB_5g116710	beta_vulgaris	KMT10547	67.9144	51.8717	kalanchoe_fedtschenkoi	Kaladp0006s0015.1.v1.1	70.5556	53.8889
BVRB_5g116710	beta_vulgaris	KMT10547	61.4973	43.8503	papaver_somniferum	RZC79747	61.1702	43.617

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression