Description

Ensembl ID BVRB_4g096600 Gene ID Accession -
Symbol Alias - Full Name tRNA modification 11 protein
Status Confidence Length 16081 bases Strand Minus strand
Position Bvchr4_un.sca024 : 120541 - 136621 RNA binding domain UPF0020
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
KMS98003 UPF0020 PF01170 1.7e-11 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- KMS98003 1994 484aa KMS98003

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_4g096600

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_4g096600beta_vulgarisKMS9800355.578539.0496chlamydomonas_reinhardtiiPNW7958961.981643.5484
BVRB_4g096600beta_vulgarisKMS9800373.966958.0578marchantia_polymorphaPTQ4817575.687159.408
BVRB_4g096600beta_vulgarisKMS9800384.504175theobroma_cacaoEOX9908284.679175.1553
BVRB_4g096600beta_vulgarisKMS9800382.231471.281citrullus_lanatusCla97C09G176870.182.916771.875
BVRB_4g096600beta_vulgarisKMS9800383.677772.7273prunus_dulcisVVA1274284.551173.4864
BVRB_4g096600beta_vulgarisKMS9800377.892665.7025oryza_rufipogonORUFI02G21570.181.956569.1304
BVRB_4g096600beta_vulgarisKMS9800382.024871.6942lupinus_angustifoliusOIW1317981.519571.2526
BVRB_4g096600beta_vulgarisKMS9800381.818272.9339manihot_esculentaOAY3208583.898374.7881
BVRB_4g096600beta_vulgarisKMS9800383.264572.7273medicago_truncatulaKEH3125583.6173.029
BVRB_4g096600beta_vulgarisKMS9800382.851271.4876ananas_comosusAco007950.1.mrna180.684169.6177
BVRB_4g096600beta_vulgarisKMS9800382.851271.4876ananas_comosusAco027716.1.mrna180.684169.6177
BVRB_4g096600beta_vulgarisKMS9800348.553740.7025ananas_comosusAco029550.1.mrna175.562763.3441
BVRB_4g096600beta_vulgarisKMS9800380.578567.562oryza_glaberrimaORGLA02G0176000.181.2568.125
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818oryza_brachyanthaOB02G28010.182.452469.7674
BVRB_4g096600beta_vulgarisKMS9800379.338865.2893triticum_urartuTuG1812G0200005310.01.T0180.672366.3866
BVRB_4g096600beta_vulgarisKMS9800379.958766.9421triticum_urartuTuG1812G0300001411.01.T0181.473768.2105
BVRB_4g096600beta_vulgarisKMS9800382.43873.7603vigna_unguiculataVigun03g135400.1.v1.282.608773.913
BVRB_4g096600beta_vulgarisKMS9800383.677774.5868glycine_maxKRH4220883.850974.7412
BVRB_4g096600beta_vulgarisKMS9800383.677773.3471glycine_maxKRH5833483.850973.499
BVRB_4g096600beta_vulgarisKMS9800382.43873.3471vigna_radiataVradi0048s00590.182.608773.499
BVRB_4g096600beta_vulgarisKMS9800380.371966.7355triticum_turgidumTRITD2Bv1G228820.277.864.6
BVRB_4g096600beta_vulgarisKMS9800379.752166.5289triticum_turgidumTRITD3Av1G043210.481.263267.7895
BVRB_4g096600beta_vulgarisKMS9800379.545566.5289triticum_turgidumTRITD3Bv1G051530.481.052667.7895
BVRB_4g096600beta_vulgarisKMS9800380.165366.1157triticum_turgidumTRITD2Av1G265630.277.664
BVRB_4g096600beta_vulgarisKMS9800383.884372.7273prunus_persicaONI0460584.759973.4864
BVRB_4g096600beta_vulgarisKMS9800341.528924.7934cyanidioschyzon_merolaeCMO333CT34.125620.3735
BVRB_4g096600beta_vulgarisKMS9800383.264573.1405quercus_lobataQL01p020593:mrna70.331661.7801
BVRB_4g096600beta_vulgarisKMS9800385.537275.6198ipomoea_trilobaitb09g04030.t185.537275.6198
BVRB_4g096600beta_vulgarisKMS9800382.851272.314helianthus_annuusmRNA:HanXRQr2_Chr03g010230184.599273.8397
BVRB_4g096600beta_vulgarisKMS9800384.710773.5537cynara_cardunculusKVI0180385.062273.8589
BVRB_4g096600beta_vulgarisKMS9800316.942113.843populus_trichocarpaPotri.003G022650.1.v4.179.611665.0485
BVRB_4g096600beta_vulgarisKMS9800382.024872.314populus_trichocarpaPotri.001G207000.1.v4.183.755373.8397
BVRB_4g096600beta_vulgarisKMS9800380.785167.562oryza_indicaBGIOSGA006259-PA78.67265.7948
BVRB_4g096600beta_vulgarisKMS9800380.371967.562lolium_perennecds.KYUSt_chr2.3439881.894768.8421
BVRB_4g096600beta_vulgarisKMS9800354.545537.8099homo_sapiensENSP0000033393457.019439.5248
BVRB_4g096600beta_vulgarisKMS9800381.198370.6612pisum_sativumPsat7g096360.1.cds81.535370.9544
BVRB_4g096600beta_vulgarisKMS9800345.247927.4793caenorhabditis_elegansY71F9AL.1.150.694430.787
BVRB_4g096600beta_vulgarisKMS9800381.611667.562brassica_junceacds.BjuA02g08260S84.042669.5745
BVRB_4g096600beta_vulgarisKMS9800345.454528.3058drosophila_melanogasterFBpp007856545.08228.0738
BVRB_4g096600beta_vulgarisKMS9800346.074426.4463saccharomyces_cerevisiaeYOL124C51.501229.5612
BVRB_4g096600beta_vulgarisKMS9800380.785167.7686leersia_perrieriLPERR02G16500.176.367264.0625
BVRB_4g096600beta_vulgarisKMS9800380.578568.595setaria_viridisTKW3971981.932869.7479
BVRB_4g096600beta_vulgarisKMS9800383.884371.6942malus_domestica_goldenmRNA:MD12G018680084.407572.1414
BVRB_4g096600beta_vulgarisKMS9800383.057972.5207quercus_subercds-POE98954.185.169574.3644
BVRB_4g096600beta_vulgarisKMS9800378.305865.9091oryza_nivaraONIVA02G22520.278.794266.3202
BVRB_4g096600beta_vulgarisKMS9800373.966965.0826citrus_clementinaESR6500085.035674.8219
BVRB_4g096600beta_vulgarisKMS9800383.057974.1736citrus_clementinaESR5944884.989475.8985
BVRB_4g096600beta_vulgarisKMS9800380.371968.3884setaria_italicaKQL3002381.722769.5378
BVRB_4g096600beta_vulgarisKMS9800381.611667.7686arabidopsis_hallerig20734.t182.809268.7631
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001336.176.470664.7059
BVRB_4g096600beta_vulgarisKMS9800380.371967.562avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0000643.341.033834.4937
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001661.17563.4615
BVRB_4g096600beta_vulgarisKMS9800381.818270.2479asparagus_officinalisONK5765984.255372.3404
BVRB_4g096600beta_vulgarisKMS9800376.239765.4959eucalyptus_grandisKCW6306868.460158.8126
BVRB_4g096600beta_vulgarisKMS9800372.933959.0909selaginella_moellendorffiiEFJ2043973.849459.8326
BVRB_4g096600beta_vulgarisKMS9800373.553758.8843selaginella_moellendorffiiEFJ2842174.47759.6234
BVRB_4g096600beta_vulgarisKMS9800383.057973.1405fraxinus_excelsiorFRAEX38873_v2_000320220.1.cds84.276774.2138
BVRB_4g096600beta_vulgarisKMS9800381.611672.5207fraxinus_excelsiorFRAEX38873_v2_000390530.3.cds83.157973.8947
BVRB_4g096600beta_vulgarisKMS9800377.68664.6694aegilops_tauschiiAET3Gv20272700.477.049264.1393
BVRB_4g096600beta_vulgarisKMS9800379.752165.7025aegilops_tauschiiAET2Gv21067600.273.946460.9195
BVRB_4g096600beta_vulgarisKMS9800380.371967.7686oryza_meridionalisOMERI02G20220.135.203629.6833
BVRB_4g096600beta_vulgarisKMS9800380.371969.8347amborella_trichopodaERN1992580.538369.9793
BVRB_4g096600beta_vulgarisKMS9800381.198368.8017sorghum_bicolorEES0696183.439570.7006
BVRB_4g096600beta_vulgarisKMS9800383.471174.3802corchorus_capsularisOMO7809383.643974.5342
BVRB_4g096600beta_vulgarisKMS9800393.59588.6364chenopodium_quinoaAUR62003397-RA:cds93.59588.6364
BVRB_4g096600beta_vulgarisKMS9800383.884373.3471juglans_regiacds.Jr14_17960_p181.526171.2851
BVRB_4g096600beta_vulgarisKMS9800365.289353.719brassica_oleraceaBo2g139140.180.20365.9898
BVRB_4g096600beta_vulgarisKMS9800350.826441.1157brassica_oleraceaBo00285s230.184.246668.1507
BVRB_4g096600beta_vulgarisKMS9800317.56216.1157brassica_oleraceaBo12869s010.186.734779.5918
BVRB_4g096600beta_vulgarisKMS9800330.578526.4463brassica_oleraceaBo03087s010.180.874369.9454
BVRB_4g096600beta_vulgarisKMS9800385.743875.6198coffea_canephoraCDO9717885.921375.7764
BVRB_4g096600beta_vulgarisKMS9800380.991768.8017digitaria_exilisDexi1A01G0016930.1:cds83.050870.5508
BVRB_4g096600beta_vulgarisKMS9800380.165368.1818digitaria_exilisDexi1B01G0015890.1:cds82.203469.9153
BVRB_4g096600beta_vulgarisKMS9800382.231472.5207cannabis_sativa_femalecds.novel_model_5116_5bd9a17a82.061972.3711
BVRB_4g096600beta_vulgarisKMS9800381.818268.3884eragrostis_curvulaTVU2969983.018969.392
BVRB_4g096600beta_vulgarisKMS9800382.43868.1818eutrema_salsugineumESQ3284583.647869.1824
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818avena_sativa_sangAVESA.00010b.r2.6AG1039850.1.CDS82.105369.4737
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818avena_sativa_sangAVESA.00010b.r2.6DG1160540.1.CDS82.105369.4737
BVRB_4g096600beta_vulgarisKMS9800380.578568.1818avena_sativa_sangAVESA.00010b.r2.6CG1136500.1.CDS82.105369.4737
BVRB_4g096600beta_vulgarisKMS9800360.950453.719trifolium_pratenseTp57577_TGAC_v2_mRNA3253881.491771.8232
BVRB_4g096600beta_vulgarisKMS9800378.305866.1157oryza_barthiiOBART02G20530.182.391369.5652
BVRB_4g096600beta_vulgarisKMS9800384.917474.1736solanum_lycopersicumSolyc10g047110.2.151.698145.1572
BVRB_4g096600beta_vulgarisKMS9800379.752166.7355hordeum_vulgareHORVU.MOREX.r3.3HG0240520.181.263268
BVRB_4g096600beta_vulgarisKMS9800379.545566.3223hordeum_vulgareHORVU.MOREX.r3.2HG0199540.173.193961.0266
BVRB_4g096600beta_vulgarisKMS9800382.851273.5537vigna_angularisKOM3129783.022873.706
BVRB_4g096600beta_vulgarisKMS9800382.43872.314gossypium_raimondiiKJB1238582.608772.4638
BVRB_4g096600beta_vulgarisKMS9800383.264573.7603gossypium_raimondiiKJB7983381.414172.1212
BVRB_4g096600beta_vulgarisKMS9800381.611669.2149panicum_halliiPUZ7609183.509570.8245
BVRB_4g096600beta_vulgarisKMS9800382.024868.595brassica_rapa_ro18A06p050590.1_BraROA.183.755370.0422
BVRB_4g096600beta_vulgarisKMS9800382.43867.7686brassica_rapa_ro18A02p049450.1_BraROA.184.355269.3446
BVRB_4g096600beta_vulgarisKMS9800383.677772.7273rosa_chinensisPRQ4211884.905773.7945
BVRB_4g096600beta_vulgarisKMS9800382.851270.8678musa_acuminataMa09_p08090.282.340970.4312
BVRB_4g096600beta_vulgarisKMS9800382.851271.9008corymbia_citriodoracds-KAF8019997.182.851271.9008
BVRB_4g096600beta_vulgarisKMS9800381.611668.1818eragrostis_tefEt_1A_005529.CDS81.780568.323
BVRB_4g096600beta_vulgarisKMS9800382.024868.8017eragrostis_tefEt_1B_013636.CDS80.855467.8208
BVRB_4g096600beta_vulgarisKMS9800381.198368.595oryza_punctataOPUNC02G18430.174.150962.6415
BVRB_4g096600beta_vulgarisKMS9800383.884371.9008daucus_carotaKZM9080184.232472.1992
BVRB_4g096600beta_vulgarisKMS9800383.471173.3471pistacia_veracds-EVM0002020.184.342474.1127
BVRB_4g096600beta_vulgarisKMS9800380.371967.562echinochloa_crusgalliscaffold41.11.cds81.894768.8421
BVRB_4g096600beta_vulgarisKMS9800380.785168.1818echinochloa_crusgalliscaffold17.660.cds82.315869.4737
BVRB_4g096600beta_vulgarisKMS9800380.991767.7686echinochloa_crusgalliscaffold5.224.cds81.159467.9089
BVRB_4g096600beta_vulgarisKMS9800381.611668.595brachypodium_distachyonKQJ9988783.157969.8947
BVRB_4g096600beta_vulgarisKMS9800381.611667.7686arabidopsis_lyratafgenesh2_kg.5__395__AT3G26410.182.809268.7631
BVRB_4g096600beta_vulgarisKMS9800379.132266.1157triticum_dicoccoidesTRIDC3BG020170.681.316367.9406
BVRB_4g096600beta_vulgarisKMS9800380.371966.7355triticum_dicoccoidesTRIDC2BG073660.276.274563.3333
BVRB_4g096600beta_vulgarisKMS9800380.165366.1157triticum_dicoccoidesTRIDC2AG068190.176.227962.8684
BVRB_4g096600beta_vulgarisKMS9800375.413263.0165triticum_dicoccoidesTRIDC3AG015500.180.752267.4779
BVRB_4g096600beta_vulgarisKMS9800380.578567.562oryza_sativaOs02t0556400-0181.2568.125
BVRB_4g096600beta_vulgarisKMS9800346.487629.3388galdieria_sulphurariaEME3174546.296329.2181
BVRB_4g096600beta_vulgarisKMS9800385.537275.6198solanum_tuberosumPGSC0003DMT40004561080.077470.793
BVRB_4g096600beta_vulgarisKMS9800381.611668.1818arabidopsis_thalianaAT3G26410.182.809269.1824
BVRB_4g096600beta_vulgarisKMS9800380.785167.7686zea_maysZm00001eb243830_P00382.83969.4915
BVRB_4g096600beta_vulgarisKMS9800384.710773.9669actinidia_chinensisPSS0283582.661372.1774
BVRB_4g096600beta_vulgarisKMS9800339.049629.9587actinidia_chinensisPSS2919246.097635.3659
BVRB_4g096600beta_vulgarisKMS9800331.611628.9256olea_europaeaOE9A049385C184.065976.9231
BVRB_4g096600beta_vulgarisKMS9800383.264575olea_europaeaOE9A053490C184.486476.1006
BVRB_4g096600beta_vulgarisKMS9800383.677772.9339lactuca_sativacds-PLY95390.184.199673.3888
BVRB_4g096600beta_vulgarisKMS9800380.371966.7355triticum_aestivumTraesCS2B02G509300.181.894768
BVRB_4g096600beta_vulgarisKMS9800380.165366.1157triticum_aestivumTraesCS2D02G482800.181.684267.3684
BVRB_4g096600beta_vulgarisKMS9800379.545566.5289triticum_aestivumTraesCS3B02G143600.181.052667.7895
BVRB_4g096600beta_vulgarisKMS9800379.752166.5289triticum_aestivumTraesCS3A02G124500.181.263267.7895
BVRB_4g096600beta_vulgarisKMS9800380.371966.3223triticum_aestivumTraesCS2A02G482700.181.894767.5789
BVRB_4g096600beta_vulgarisKMS9800385.950476.8595nicotiana_attenuataOIT0062284.89875.9184
BVRB_4g096600beta_vulgarisKMS9800383.057973.5537phaseolus_vulgarisESW3106283.229873.706
BVRB_4g096600beta_vulgarisKMS9800382.024868.595brassica_napusCDY1363183.755370.0422
BVRB_4g096600beta_vulgarisKMS9800368.801756.6116brassica_napusCDY4899183.879169.0176
BVRB_4g096600beta_vulgarisKMS9800327.479324.5868brassica_napusCDY5216883.12574.375
BVRB_4g096600beta_vulgarisKMS9800317.975216.3223brassica_napusCDY5217086.138678.2178
BVRB_4g096600beta_vulgarisKMS9800369.421557.2314brassica_napusCDX8361684.634869.7733
BVRB_4g096600beta_vulgarisKMS9800332.43822.5207brassica_napusCDY5216777.722853.9604
BVRB_4g096600beta_vulgarisKMS9800381.818268.8017arabis_alpinaKFK3357083.018969.8113
BVRB_4g096600beta_vulgarisKMS9800334.710728.3058cucumis_sativusKGN4421374.336360.6195
BVRB_4g096600beta_vulgarisKMS9800382.644671.4876corylus_avellanaCav10g06520.t149.689442.9814
BVRB_4g096600beta_vulgarisKMS9800385.950475.4132capsicum_annuumPHT7038787.39576.6807
BVRB_4g096600beta_vulgarisKMS9800378.305866.1157oryza_glumipatulaOGLUM02G20800.278.794266.5281
BVRB_4g096600beta_vulgarisKMS9800374.793462.3967saccharum_spontaneumSspon.04G0025390-3D-mRNA-1:cds81.531568.018
BVRB_4g096600beta_vulgarisKMS9800378.71966.1157saccharum_spontaneumSspon.04G0025390-2C-mRNA-1:cds75.445563.3663
BVRB_4g096600beta_vulgarisKMS9800378.925669.0083nymphaea_colorataNC1G0090230.1:cds79.583369.5833
BVRB_4g096600beta_vulgarisKMS9800383.471174.3802vitis_viniferaVitvi12g01620_P00184.69675.4717
BVRB_4g096600beta_vulgarisKMS9800351.652938.0165ostreococcus_lucimarinusABP0018653.304939.2324
BVRB_4g096600beta_vulgarisKMS9800383.677772.314prunus_aviumPav_sc0000700.1_g600.1.mk:mrna82.822171.5746
BVRB_4g096600beta_vulgarisKMS9800381.611668.1818camelina_sativaCsa09g009800.182.809269.1824
BVRB_4g096600beta_vulgarisKMS9800334.297529.3388camelina_sativaCsa04g011930.181.372669.6078
BVRB_4g096600beta_vulgarisKMS9800380.785167.562camelina_sativaCsa04g011940.181.970668.5535
BVRB_4g096600beta_vulgarisKMS9800381.40568.3884camelina_sativaCsa06g006030.182.599669.392
BVRB_4g096600beta_vulgarisKMS9800384.090973.5537sesamum_indicumSIN_1022992.t79.803969.8039
BVRB_4g096600beta_vulgarisKMS9800373.966955.5785chara_brauniiGBG8350067.674950.8507
BVRB_4g096600beta_vulgarisKMS9800381.611669.8347kalanchoe_fedtschenkoiKaladp0062s0198.1.v1.182.983271.0084
BVRB_4g096600beta_vulgarisKMS9800383.677771.0744dioscorea_rotundataDRNTG_00193.184.905772.1174
BVRB_4g096600beta_vulgarisKMS9800372.520758.2645physcomitrium_patensPp3c13_18080V3.171.486857.4338
BVRB_4g096600beta_vulgarisKMS9800379.958766.5289secale_cerealeSECCE3Rv1G0163890.181.473767.7895
BVRB_4g096600beta_vulgarisKMS9800380.165366.3223secale_cerealeSECCE2Rv1G0126160.181.684267.5789
BVRB_4g096600beta_vulgarisKMS9800381.198372.314papaver_somniferumRZC6755282.736873.6842
BVRB_4g096600beta_vulgarisKMS9800382.024873.1405papaver_somniferumRZC4588382.365173.444

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression