RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	BVRB_3g070550	Gene ID		Accession	-
Symbol		Alias	-	Full Name	Uncharacterized protein At1g48350
Status	Confidence	Length	3505 bases	Strand	Plus strand
Position	Bvchr3_un.sca012 : 534293 - 537797	RNA binding domain	Ribosomal_L18p
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KMS98612	Ribosomal_L18p	PF00861	3.2e-46	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KMS98612	758	167aa	KMS98612

Gene Model

Click here to download BVRB_3g070550's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download BVRB_3g070550's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_3g070550

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_3g070550	beta_vulgaris	KMS98612	41.9162	29.9401	chondrus_crispus	CCP38120	65.4206	46.729
BVRB_3g070550	beta_vulgaris	KMS98612	54.491	40.7186	chlamydomonas_reinhardtii	PNW88959	62.7586	46.8966
BVRB_3g070550	beta_vulgaris	KMS98612	68.2635	54.491	marchantia_polymorpha	PTQ36989	61.2903	48.9247
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	65.8683	theobroma_cacao	EOY31692	73.2955	62.5
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	65.8683	citrullus_lanatus	Cla97C05G088670.1	68.5864	57.5916
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	63.4731	ficus_carica	FCD_00011811-RA:cds	79.375	66.25
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	63.4731	ficus_carica	FCD_00036845-RA:cds	79.375	66.25
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	66.4671	prunus_dulcis	VVA38448	78.9157	66.8675
BVRB_3g070550	beta_vulgaris	KMS98612	68.8623	56.8862	oryza_longistaminata	KN538833.1_FGP010	68.8623	56.8862
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_rufipogon	ORUFI03G41400.1	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	80.2395	67.0659	lupinus_angustifolius	OIV98334	80.7229	67.4699
BVRB_3g070550	beta_vulgaris	KMS98612	59.2814	52.6946	lupinus_angustifolius	OIV97325	85.3448	75.8621
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	67.0659	manihot_esculenta	OAY59654	80.3681	68.7117
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	65.2695	medicago_truncatula	AES65642	78.3133	65.6627
BVRB_3g070550	beta_vulgaris	KMS98612	74.2515	60.479	ananas_comosus	Aco013634.1.mrna1	70.4545	57.3864
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	65.8683	cucumis_melo	MELO3C006766.2.1	64.3564	54.4554
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_glaberrima	ORGLA03G0364200.1	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	57.485	oryza_brachyantha	OB03G46680.1	68.6047	55.814
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_urartu	TuG1812G0400003503.01.T01	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	64.6707	vigna_unguiculata	Vigun09g043700.1.v1.2	79.6296	66.6667
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	62.2754	glycine_max	KRH12645	78.3951	64.1975
BVRB_3g070550	beta_vulgaris	KMS98612	76.6467	63.4731	glycine_max	KRH37608	80	66.25
BVRB_3g070550	beta_vulgaris	KMS98612	62.8743	53.2934	vigna_radiata	Vradi05g01590.1	71.4286	60.5442
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_turgidum	TRITD0Uv1G029420.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_turgidum	TRITD5Bv1G235490.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	65.8683	prunus_persica	ONI29697	78.9157	66.2651
BVRB_3g070550	beta_vulgaris	KMS98612	40.1198	28.1437	cyanidioschyzon_merolae	CMV179CT	61.4679	43.1193
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	67.6647	quercus_lobata	QL06p014840:mrna	76.8786	65.3179
BVRB_3g070550	beta_vulgaris	KMS98612	76.6467	64.0719	ipomoea_triloba	itb08g07500.t1	74.8538	62.5731
BVRB_3g070550	beta_vulgaris	KMS98612	80.2395	65.2695	helianthus_annuus	mRNA:HanXRQr2_Chr10g0443011	80.7229	65.6627
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	64.0719	helianthus_annuus	mRNA:HanXRQr2_Chr16g0750381	62.0192	51.4423
BVRB_3g070550	beta_vulgaris	KMS98612	80.8383	65.8683	cynara_cardunculus	KVH93463	79.8817	65.0888
BVRB_3g070550	beta_vulgaris	KMS98612	59.8802	48.503	cynara_cardunculus	KVI07772	57.1429	46.2857
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	64.6707	populus_trichocarpa	Potri.010G005000.3.v4.1	78.7879	65.4545
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_indica	BGIOSGA013859-PA	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	lolium_perenne	cds.KYUSt_chr4.4228	71.8563	59.2814
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	65.2695	pisum_sativum	Psat1g016560.1.cds	80.4878	66.4634
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	brassica_juncea	cds.BjuA08g04150S	73.0994	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.0719	brassica_juncea	cds.BjuB07g06350S	73.0994	62.5731
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	58.6826	leersia_perrieri	LPERR03G33760.1	71.0059	57.9882
BVRB_3g070550	beta_vulgaris	KMS98612	72.4551	59.8802	setaria_viridis	TKV90335	71.5976	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	63.4731	56.8862	malus_domestica_golden	mRNA:MD13G0121500	83.4646	74.8031
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	68.8623	malus_domestica_golden	mRNA:MD16G0117000	81.4815	70.9877
BVRB_3g070550	beta_vulgaris	KMS98612	74.2515	65.2695	quercus_suber	cds-POE87045.1	92.5373	81.3433
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_nivara	ONIVA03G41440.1	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	64.6707	citrus_clementina	ESR55180	76.6082	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	72.4551	59.8802	setaria_italica	KQK86299	71.5976	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	75.4491	64.6707	arabidopsis_halleri	g17436.t1	74.1176	63.5294
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	avena_sativa_ot3098	cds.AVESA.00001b.r3.4Ag0001993.1	71.8563	59.2814
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	avena_sativa_ot3098	cds.AVESA.00001b.r3.4Dg0002347.1	71.8563	59.2814
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	avena_sativa_ot3098	cds.AVESA.00001b.r3.7Cg0000267.1	63.4921	52.381
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	67.6647	asparagus_officinalis	ONK63003	75.8621	64.9425
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	64.6707	eucalyptus_grandis	KCW45272	75.7225	62.4277
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	63.4731	eucalyptus_grandis	KCW85352	75.1445	61.2717
BVRB_3g070550	beta_vulgaris	KMS98612	57.485	46.1078	selaginella_moellendorffii	EFJ32258	85.7143	68.75
BVRB_3g070550	beta_vulgaris	KMS98612	59.2814	47.3054	selaginella_moellendorffii	EFJ16546	85.3448	68.1034
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	68.2635	fraxinus_excelsior	FRAEX38873_v2_000362880.1.cds	76.7857	67.8571
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	aegilops_tauschii	AET5Gv21128000.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_meridionalis	OMERI03G36420.1	68.6391	56.8047
BVRB_3g070550	beta_vulgaris	KMS98612	80.8383	67.0659	amborella_trichopoda	ERN09967	82.3171	68.2927
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	58.0838	sorghum_bicolor	EER90592	72.7273	58.7879
BVRB_3g070550	beta_vulgaris	KMS98612	86.8263	77.2455	chenopodium_quinoa	AUR62023677-RA:cds	87.8788	78.1818
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	68.2635	juglans_regia	cds.Jr12_09440_p1	79.5181	68.6747
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	68.8623	juglans_regia	cds.Jr12_09430_p1	79.6407	68.8623
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	brassica_oleracea	Bo8g015130.1	73.0994	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	67.0659	coffea_canephora	CDP18513	76.7857	66.6667
BVRB_3g070550	beta_vulgaris	KMS98612	73.0539	59.2814	digitaria_exilis	Dexi9A01G0002530.1:cds	72.1893	58.5799
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	63.4731	cannabis_sativa_female	cds.evm.model.04.564.2.5bd9b137	79.375	66.25
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	58.6826	eragrostis_curvula	TVU44300	71.0059	57.9882
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	58.0838	eragrostis_curvula	TVU43886	69.8225	57.3965
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	62.8743	eutrema_salsugineum	ESQ30709	72.2543	60.6936
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	avena_sativa_sang	AVESA.00010b.r2.4DG0760150.1.CDS	71.8563	59.2814
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	59.2814	avena_sativa_sang	AVESA.00010b.r2.4AG0616740.1.CDS	71.8563	59.2814
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	60.479	avena_sativa_sang	AVESA.00010b.r2.7CG0711760.1.CDS	71.8563	60.479
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	61.6766	trifolium_pratense	Tp57577_TGAC_v2_mRNA18640	78.882	63.9752
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_barthii	OBART03G39580.1	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	68.2635	solanum_lycopersicum	Solyc12g098890.2.1	82.0988	70.3704
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	64.0719	vigna_angularis	KOM26019	80.2469	66.0494
BVRB_3g070550	beta_vulgaris	KMS98612	77.2455	66.4671	gossypium_raimondii	KJB23404	50.3906	43.3594
BVRB_3g070550	beta_vulgaris	KMS98612	72.4551	59.8802	panicum_hallii	PUZ36259	71.5976	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	65.2695	cajanus_cajan	C.cajan_00617.t	81.9355	70.3226
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	68.8623	rosa_chinensis	PRQ39704	81.761	72.327
BVRB_3g070550	beta_vulgaris	KMS98612	80.8383	64.0719	musa_acuminata	Ma11_p16510.1	72.5806	57.5269
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	63.4731	corymbia_citriodora	cds-KAF8039221.1	76.3006	61.2717
BVRB_3g070550	beta_vulgaris	KMS98612	71.2575	58.6826	eragrostis_tef	Et_4B_038392.CDS	70.4142	57.9882
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	58.0838	eragrostis_tef	Et_4A_034248.CDS	69.8225	57.3965
BVRB_3g070550	beta_vulgaris	KMS98612	70.0599	56.8862	oryza_punctata	OPUNC03G36750.1	69.2308	56.213
BVRB_3g070550	beta_vulgaris	KMS98612	80.2395	65.8683	daucus_carota	KZM85655	79.7619	65.4762
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	65.2695	pistacia_vera	cds-EVM0003077.1	76.3006	63.0058
BVRB_3g070550	beta_vulgaris	KMS98612	77.8443	68.2635	pistacia_vera	cds-EVM0020682.1	87.8378	77.027
BVRB_3g070550	beta_vulgaris	KMS98612	73.0539	59.8802	echinochloa_crusgalli	scaffold65.213.cds	72.1893	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	73.0539	59.8802	echinochloa_crusgalli	scaffold176.312.cds	72.1893	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	73.0539	59.8802	echinochloa_crusgalli	scaffold3.584.cds	72.1893	59.1716
BVRB_3g070550	beta_vulgaris	KMS98612	71.8563	58.0838	brachypodium_distachyon	KQK12362	71.0059	57.3965
BVRB_3g070550	beta_vulgaris	KMS98612	75.4491	64.6707	arabidopsis_lyrata	fgenesh2_kg.1__3924__AT1G48350.1	74.1176	63.5294
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_dicoccoides	TRIDC5BG075600.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	62.8743	53.2934	triticum_dicoccoides	TRIDC4AG054940.2	84	71.2
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_sativa	Os03t0828100-02	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	80.2395	68.2635	solanum_tuberosum	PGSC0003DMT400011931	82.716	70.3704
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	arabidopsis_thaliana	AT1G48350.1	73.5294	63.5294
BVRB_3g070550	beta_vulgaris	KMS98612	71.2575	58.0838	zea_mays	Zm00001eb063340_P001	72.1212	58.7879
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	66.4671	actinidia_chinensis	PSS24521	83.125	69.375
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	67.0659	actinidia_chinensis	PSS35898	83.125	70
BVRB_3g070550	beta_vulgaris	KMS98612	79.0419	67.6647	olea_europaea	OE9A015326C1	61.9718	53.0516
BVRB_3g070550	beta_vulgaris	KMS98612	80.8383	67.0659	lactuca_sativa	cds-PLY76345.1	79.4118	65.8824
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_aestivum	TraesCS4A02G368800.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_aestivum	TraesCS5D02G504600.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	triticum_aestivum	TraesCS5B02G503800.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	67.0659	nicotiana_attenuata	OIS96416	80.8642	69.1358
BVRB_3g070550	beta_vulgaris	KMS98612	75.4491	64.6707	phaseolus_vulgaris	ESW10584	78.2609	67.0807
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	brassica_napus	CDX77315	73.0994	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	brassica_napus	CDY41837	73.0994	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	74.8503	64.6707	arabis_alpina	KFK36100	74.4048	64.2857
BVRB_3g070550	beta_vulgaris	KMS98612	76.6467	64.0719	cucumis_sativus	KGN57222	75.2941	62.9412
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	67.0659	corylus_avellana	Cav01g08080.t1	58.8496	49.5575
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	68.8623	capsicum_annuum	PHT67000	82.9114	72.7848
BVRB_3g070550	beta_vulgaris	KMS98612	69.4611	57.485	oryza_glumipatula	OGLUM03G39460.1	68.2353	56.4706
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	69.4611	vitis_vinifera	Vitvi05g00279_P001	82.6087	72.0497
BVRB_3g070550	beta_vulgaris	KMS98612	46.7066	32.9341	ostreococcus_lucimarinus	ABO97082	63.4146	44.7154
BVRB_3g070550	beta_vulgaris	KMS98612	78.4431	67.6647	prunus_avium	Pav_sc0000478.1_g400.1.mk:mrna	78.9157	68.0723
BVRB_3g070550	beta_vulgaris	KMS98612	75.4491	64.6707	camelina_sativa	Csa17g078950.1	73.6842	63.1579
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	64.6707	camelina_sativa	Csa14g054360.1	72.9885	62.069
BVRB_3g070550	beta_vulgaris	KMS98612	76.6467	61.6766	sesamum_indicum	SIN_1024920.t	78.5276	63.1902
BVRB_3g070550	beta_vulgaris	KMS98612	64.0719	45.509	chara_braunii	GBG64953	53.7688	38.191
BVRB_3g070550	beta_vulgaris	KMS98612	79.6407	64.6707	kalanchoe_fedtschenkoi	Kaladp0076s0419.1.v1.1	77.3256	62.7907
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	62.8743	dioscorea_rotundata	DRNTG_25267.1	74.7059	61.7647
BVRB_3g070550	beta_vulgaris	KMS98612	67.0659	55.0898	physcomitrium_patens	Pp3c11_5070V3.2	62.2222	51.1111
BVRB_3g070550	beta_vulgaris	KMS98612	67.0659	52.6946	physcomitrium_patens	Pp3c7_24650V3.1	62.5698	49.162
BVRB_3g070550	beta_vulgaris	KMS98612	67.6647	52.6946	physcomitrium_patens	Pp3c1_8470V3.1	62.4309	48.6188
BVRB_3g070550	beta_vulgaris	KMS98612	57.485	43.1138	physcomitrium_patens	Pp3c1_1240V3.4	48	36
BVRB_3g070550	beta_vulgaris	KMS98612	70.6587	59.2814	secale_cereale	SECCE7Rv1G0463180.1	69.4118	58.2353
BVRB_3g070550	beta_vulgaris	KMS98612	76.0479	65.2695	papaver_somniferum	RZC56160	66.8421	57.3684

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

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RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression