Description

Ensembl ID BVRB_3g048600 Gene ID Accession -
Symbol Alias - Full Name PRPL28
Status Confidence Length 1770 bases Strand Plus strand
Position 3 : 601366 - 603135 RNA binding domain Ribosomal_L28
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
KMT16569 Ribosomal_L28 PF00830 4.1e-22 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- KMT16569 653 154aa KMT16569

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_3g048600beta_vulgarisKMS9820228.217814.3564beta_vulgarisKMT1656937.01318.8312
BVRB_3g048600beta_vulgarisKMT1819829.665114.8325beta_vulgarisKMT1656940.259720.1299

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_3g048600beta_vulgarisKMT1656946.103929.8701chlamydomonas_reinhardtiiPNW8190936.410323.5897
BVRB_3g048600beta_vulgarisKMT165695037.6623marchantia_polymorphaPTQ3364758.778644.2748
BVRB_3g048600beta_vulgarisKMT1656974.02661.6883theobroma_cacaoEOY0612879.166765.9722
BVRB_3g048600beta_vulgarisKMT1656952.597446.7532theobroma_cacaoEOY1937578.640869.9029
BVRB_3g048600beta_vulgarisKMT1656971.428662.987citrullus_lanatusCla97C05G084850.173.825565.1007
BVRB_3g048600beta_vulgarisKMT1656964.285751.9481ficus_caricaFCD_00011088-RA:cds67.808254.7945
BVRB_3g048600beta_vulgarisKMT1656975.97463.6364ficus_caricaFCD_00032155-RA:cds78.523565.7718
BVRB_3g048600beta_vulgarisKMT1656976.623465.5844prunus_dulcisVVA1615476.623465.5844
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_rufipogonORUFI05G00110.173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656969.480559.7403lupinus_angustifoliusOIW0771975.352164.7887
BVRB_3g048600beta_vulgarisKMT1656977.272764.9351manihot_esculentaOAY2813177.272764.9351
BVRB_3g048600beta_vulgarisKMT1656970.129961.6883medicago_truncatulaKEH4105073.972665.0685
BVRB_3g048600beta_vulgarisKMT1656966.883159.0909ananas_comosusAco004585.1.mrna173.571465
BVRB_3g048600beta_vulgarisKMT1656971.428662.987cucumis_meloMELO3C006400.2.173.333364.6667
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_glaberrimaORGLA05G0000800.173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656964.935153.8961oryza_brachyanthaOB05G10130.173.529461.0294
BVRB_3g048600beta_vulgarisKMT1656964.285751.2987triticum_urartuTuG1812G0100000031.01.T0172.262857.6642
BVRB_3g048600beta_vulgarisKMT1656944.155834.4156triticum_urartuTuG1812G0100000171.01.T01.cds34830186.07667.0886
BVRB_3g048600beta_vulgarisKMT1656969.480556.4935vigna_unguiculataVigun07g003100.1.v1.276.428662.1429
BVRB_3g048600beta_vulgarisKMT1656967.532555.1948glycine_maxKRH3164365.822853.7975
BVRB_3g048600beta_vulgarisKMT1656964.935151.2987triticum_turgidumTRITD1Av1G000590.171.942456.8345
BVRB_3g048600beta_vulgarisKMT1656962.98750triticum_turgidumTRITD1Bv1G001010.172.932357.8947
BVRB_3g048600beta_vulgarisKMT1656949.350744.8052prunus_persicaONH9091978.350571.134
BVRB_3g048600beta_vulgarisKMT1656976.623465.5844prunus_persicaONI2677876.623465.5844
BVRB_3g048600beta_vulgarisKMT1656977.922166.8831quercus_lobataQL06p019992:mrna75.949465.1899
BVRB_3g048600beta_vulgarisKMT1656974.675364.9351ipomoea_trilobaitb04g15280.t175.657965.7895
BVRB_3g048600beta_vulgarisKMT1656968.831262.3377helianthus_annuusmRNA:HanXRQr2_Chr14g063333175.177368.0851
BVRB_3g048600beta_vulgarisKMT1656977.272765.5844populus_trichocarpaPotri.010G068500.1.v4.177.777866.0131
BVRB_3g048600beta_vulgarisKMT1656972.727359.7403populus_trichocarpaPotri.008G169800.2.v4.17057.5
BVRB_3g048600beta_vulgarisKMT1656962.98751.9481oryza_indicaBGIOSGA018986-PA45.539937.5587
BVRB_3g048600beta_vulgarisKMT1656965.584448.7013lolium_perennecds.KYUSt_chr3.4424372.661953.9568
BVRB_3g048600beta_vulgarisKMT1656970.129959.7403pisum_sativumPsat6g103800.1.cds73.972663.0137
BVRB_3g048600beta_vulgarisKMT1656969.480562.3377brassica_junceacds.BjuA04g21320S74.825267.1329
BVRB_3g048600beta_vulgarisKMT1656970.779262.987brassica_junceacds.BjuB01g41800S76.760668.3099
BVRB_3g048600beta_vulgarisKMT1656963.636453.8961leersia_perrieriLPERR05G00100.176.562564.8438
BVRB_3g048600beta_vulgarisKMT1656969.480554.5455setaria_viridisTKV9371576.428660
BVRB_3g048600beta_vulgarisKMT1656961.688355.1948malus_domestica_goldenmRNA:MD13G019180069.852962.5
BVRB_3g048600beta_vulgarisKMT1656972.727361.6883malus_domestica_goldenmRNA:MD16G019340072.727361.6883
BVRB_3g048600beta_vulgarisKMT1656978.571467.5325quercus_subercds-POE46586.178.571467.5325
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_nivaraONIVA05G00100.173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656977.922167.5325citrus_clementinaESR3353477.922167.5325
BVRB_3g048600beta_vulgarisKMT1656968.831254.5455setaria_italicaKQK8896975.714360
BVRB_3g048600beta_vulgarisKMT1656970.129963.6364arabidopsis_hallerig03242.t177.697870.5036
BVRB_3g048600beta_vulgarisKMT1656964.935151.9481avena_sativa_ot3098cds.AVESA.00001b.r3.4Dg0003701.168.493154.7945
BVRB_3g048600beta_vulgarisKMT1656969.480561.039asparagus_officinalisONK6387450.710944.5498
BVRB_3g048600beta_vulgarisKMT1656970.129959.0909eucalyptus_grandisKCW6028471.523260.2649
BVRB_3g048600beta_vulgarisKMT1656941.558430.5195selaginella_moellendorffiiEFJ0559783.116961.039
BVRB_3g048600beta_vulgarisKMT1656975.97464.2857fraxinus_excelsiorFRAEX38873_v2_000075490.1.cds7866
BVRB_3g048600beta_vulgarisKMT1656965.584451.9481aegilops_tauschiiAET1Gv20000300.271.631256.7376
BVRB_3g048600beta_vulgarisKMT1656966.233853.8961oryza_meridionalisOMERI05G00160.174.452660.5839
BVRB_3g048600beta_vulgarisKMT1656969.480559.7403amborella_trichopodaERN1891366.049456.7901
BVRB_3g048600beta_vulgarisKMT1656970.129955.1948sorghum_bicolorEER9158074.482858.6207
BVRB_3g048600beta_vulgarisKMT1656974.02664.9351corchorus_capsularisOMO9526579.166769.4444
BVRB_3g048600beta_vulgarisKMT1656987.662382.4675chenopodium_quinoaAUR62015538-RA:cds90.60485.2349
BVRB_3g048600beta_vulgarisKMT1656973.376664.9351juglans_regiacds.Jr12_14220_p171.51963.2911
BVRB_3g048600beta_vulgarisKMT1656973.376664.9351juglans_regiacds.Jr12_14240_p171.51963.2911
BVRB_3g048600beta_vulgarisKMT1656977.272763.6364coffea_canephoraCDO9927177.777864.0523
BVRB_3g048600beta_vulgarisKMT1656969.480554.5455digitaria_exilisDexi9A01G0022610.1:cds76.428660
BVRB_3g048600beta_vulgarisKMT1656970.129955.1948digitaria_exilisDexi9B01G0022080.1:cds77.142960.7143
BVRB_3g048600beta_vulgarisKMT1656971.428662.987cannabis_sativa_femalecds.novel_model_6001_5bd9a17a70.512862.1795
BVRB_3g048600beta_vulgarisKMT1656968.831255.8442eragrostis_curvulaTVU1844276.25961.8705
BVRB_3g048600beta_vulgarisKMT1656970.779262.987eutrema_salsugineumESQ5194276.760668.3099
BVRB_3g048600beta_vulgarisKMT1656964.935151.9481avena_sativa_sangAVESA.00010b.r2.4DG0787210.1.CDS72.992758.3942
BVRB_3g048600beta_vulgarisKMT1656964.935149.3507avena_sativa_sangAVESA.00010b.r2.4CG1321130.1.CDS71.428654.2857
BVRB_3g048600beta_vulgarisKMT1656964.285751.2987avena_sativa_sangAVESA.00010b.r2.4AG0647970.1.CDS72.262857.6642
BVRB_3g048600beta_vulgarisKMT1656963.636451.2987avena_sativa_sangAVESA.00010b.r2.4DG0775520.1.CDS71.532857.6642
BVRB_3g048600beta_vulgarisKMT1656967.532557.1429trifolium_pratenseTp57577_TGAC_v2_mRNA3389674.820163.3094
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_barthiiOBART05G00090.173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656972.077962.3377solanum_lycopersicumSolyc09g090410.3.174.496664.4295
BVRB_3g048600beta_vulgarisKMT1656968.181855.1948vigna_angularisKOM3388673.943759.8592
BVRB_3g048600beta_vulgarisKMT1656970.779260.3896gossypium_raimondiiKJB7241876.223865.035
BVRB_3g048600beta_vulgarisKMT1656971.428662.3377gossypium_raimondiiKJB2839075.862166.2069
BVRB_3g048600beta_vulgarisKMT1656969.480554.5455panicum_halliiPUZ3894176.428660
BVRB_3g048600beta_vulgarisKMT1656965.584456.4935cajanus_cajanC.cajan_20366.t71.631261.7021
BVRB_3g048600beta_vulgarisKMT1656953.246842.8571cajanus_cajanC.cajan_28084.t73.873959.4595
BVRB_3g048600beta_vulgarisKMT1656969.480562.3377brassica_rapa_ro18A04p031250.1_BraROA.175.352167.6056
BVRB_3g048600beta_vulgarisKMT1656965.584451.9481rosa_chinensisPRQ3671266.013152.2876
BVRB_3g048600beta_vulgarisKMT1656972.727361.039rosa_chinensisPRQ3671674.666762.6667
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961musa_acuminataMa01_p13730.161.585450.6098
BVRB_3g048600beta_vulgarisKMT1656974.02661.039corymbia_citriodoracds-KAF8015824.17561.8421
BVRB_3g048600beta_vulgarisKMT1656961.688348.7013eragrostis_tefEt_9B_063997.CDS74.803159.0551
BVRB_3g048600beta_vulgarisKMT1656968.181855.8442eragrostis_tefEt_9A_061319.CDS75.539661.8705
BVRB_3g048600beta_vulgarisKMT1656965.584454.5455oryza_punctataOPUNC05G00070.173.188460.8696
BVRB_3g048600beta_vulgarisKMT1656977.272761.6883daucus_carotaKZN0965076.774261.2903
BVRB_3g048600beta_vulgarisKMT1656977.922169.4805pistacia_veracds-EVM0029414.18071.3333
BVRB_3g048600beta_vulgarisKMT1656969.480553.8961echinochloa_crusgalliscaffold57.260.cds76.428659.2857
BVRB_3g048600beta_vulgarisKMT1656968.831253.8961echinochloa_crusgalliscaffold332.22.cds76.25959.7122
BVRB_3g048600beta_vulgarisKMT1656968.181853.8961echinochloa_crusgalliscaffold317.67.cds75.539659.7122
BVRB_3g048600beta_vulgarisKMT1656964.285751.9481brachypodium_distachyonKQK0816072.794158.8235
BVRB_3g048600beta_vulgarisKMT1656970.779263.6364arabidopsis_lyratascaffold_401920.176.223868.5315
BVRB_3g048600beta_vulgarisKMT1656972.077962.3377arabidopsis_lyratascaffold_100406.181.021970.073
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_sativaOs05t0101400-0173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656972.077963.6364solanum_tuberosumPGSC0003DMT40004420274.496665.7718
BVRB_3g048600beta_vulgarisKMT1656970.779264.2857arabidopsis_thalianaAT2G33450.176.223869.2308
BVRB_3g048600beta_vulgarisKMT1656968.831255.1948zea_maysZm00001eb222850_P00175.177360.2837
BVRB_3g048600beta_vulgarisKMT1656968.181853.2468zea_maysZm00001eb047510_P00174.468158.156
BVRB_3g048600beta_vulgarisKMT1656959.090951.9481actinidia_chinensisPSS1771768.421160.1504
BVRB_3g048600beta_vulgarisKMT1656968.831261.6883actinidia_chinensisPSS2390771.621664.1892
BVRB_3g048600beta_vulgarisKMT1656975.324765.5844olea_europaeaOE9A030085C177.333367.3333
BVRB_3g048600beta_vulgarisKMT1656972.727364.2857lactuca_sativacds-PLY70302.173.684265.1316
BVRB_3g048600beta_vulgarisKMT1656965.584451.9481triticum_aestivumTraesCS1D02G003700.171.631256.7376
BVRB_3g048600beta_vulgarisKMT1656964.935151.2987triticum_aestivumTraesCS1A02G001800.171.942456.8345
BVRB_3g048600beta_vulgarisKMT1656962.98750triticum_aestivumTraesCS1B02G000600.172.932357.8947
BVRB_3g048600beta_vulgarisKMT1656967.532552.5974phaseolus_vulgarisESW1791377.03760
BVRB_3g048600beta_vulgarisKMT1656967.532560.3896brassica_napusCDY1949273.758965.9574
BVRB_3g048600beta_vulgarisKMT1656970.779262.987brassica_napusCDY3771876.223867.8322
BVRB_3g048600beta_vulgarisKMT1656970.129962.3377brassica_napusCDY2373376.056367.6056
BVRB_3g048600beta_vulgarisKMT1656970.129963.6364arabis_alpinaKFK3104573.469466.6667
BVRB_3g048600beta_vulgarisKMT1656971.428662.987cucumis_sativusKGN5683373.333364.6667
BVRB_3g048600beta_vulgarisKMT1656977.922166.2338corylus_avellanaCav04g14600.t179.470267.5497
BVRB_3g048600beta_vulgarisKMT1656971.428661.039capsicum_annuumPHT8558677.464866.1972
BVRB_3g048600beta_vulgarisKMT1656965.584453.8961oryza_glumipatulaOGLUM05G00130.173.722660.5839
BVRB_3g048600beta_vulgarisKMT1656970.129955.1948saccharum_spontaneumSspon.01G0018480-4D-mRNA-1:cds76.056359.8592
BVRB_3g048600beta_vulgarisKMT1656970.129955.1948saccharum_spontaneumSspon.01G0018480-1P-mRNA-1:cds76.056359.8592
BVRB_3g048600beta_vulgarisKMT1656969.480555.1948saccharum_spontaneumSspon.01G0018480-1A-mRNA-1:cds31.563425.0737
BVRB_3g048600beta_vulgarisKMT1656969.480554.5455saccharum_spontaneumSspon.01G0018480-3C-mRNA-1:cds74.825258.7413
BVRB_3g048600beta_vulgarisKMT1656947.402640.2597nymphaea_colorataNC3G0232150.1:cds79.347867.3913
BVRB_3g048600beta_vulgarisKMT1656947.402639.6104nymphaea_colorataNC3G0232320.1:cds79.347866.3043
BVRB_3g048600beta_vulgarisKMT1656967.532557.7922nymphaea_colorataNC8G0210680.1:cds73.758963.1206
BVRB_3g048600beta_vulgarisKMT1656971.428661.039vitis_viniferaVitvi05g00795_P00175.342564.3836
BVRB_3g048600beta_vulgarisKMT1656933.766225.3247ostreococcus_lucimarinusABO9525571.232953.4247
BVRB_3g048600beta_vulgarisKMT1656960.389651.9481prunus_aviumPav_sc0000557.1_g1250.1.mk:mrna72.09362.0155
BVRB_3g048600beta_vulgarisKMT1656975.97464.9351prunus_aviumPav_sc0005678.1_g180.1.mk:mrna75.97464.9351
BVRB_3g048600beta_vulgarisKMT1656937.662334.4156prunus_aviumPav_sc0000744.1_g280.1.mk:CDS:185.294177.9412
BVRB_3g048600beta_vulgarisKMT1656970.779261.6883camelina_sativaCsa03g005770.176.760666.9014
BVRB_3g048600beta_vulgarisKMT1656970.779264.2857camelina_sativaCsa05g022960.176.223869.2308
BVRB_3g048600beta_vulgarisKMT1656971.428662.987camelina_sativaCsa17g007680.177.464868.3099
BVRB_3g048600beta_vulgarisKMT1656970.129963.6364camelina_sativaCsa16g007790.175.524568.5315
BVRB_3g048600beta_vulgarisKMT1656970.779264.2857camelina_sativaCsa07g007930.176.223869.2308
BVRB_3g048600beta_vulgarisKMT1656970.779261.6883camelina_sativaCsa14g005660.176.760666.9014
BVRB_3g048600beta_vulgarisKMT1656976.623464.2857sesamum_indicumSIN_1002832.t61.780151.8325
BVRB_3g048600beta_vulgarisKMT1656938.311730.5195chara_brauniiGBG7685767.816154.023
BVRB_3g048600beta_vulgarisKMT1656974.675360.3896kalanchoe_fedtschenkoiKaladp0076s0393.1.v1.175.657961.1842
BVRB_3g048600beta_vulgarisKMT1656976.623461.039kalanchoe_fedtschenkoiKaladp0102s0028.1.v1.179.194663.0872
BVRB_3g048600beta_vulgarisKMT1656966.883158.4416dioscorea_rotundataDRNTG_23812.172.02862.9371
BVRB_3g048600beta_vulgarisKMT1656952.597443.5065physcomitrium_patensPp3c6_1140V3.362.790751.938
BVRB_3g048600beta_vulgarisKMT1656950.649341.5584physcomitrium_patensPp3c5_28500V3.160.937550
BVRB_3g048600beta_vulgarisKMT1656966.883150.6493secale_cerealeSECCE1Rv1G0003380.171.527854.1667
BVRB_3g048600beta_vulgarisKMT1656972.077962.3377papaver_somniferumRZC6890074.496664.4295
BVRB_3g048600beta_vulgarisKMT1656972.077962.987papaver_somniferumRZC6241874.496665.1007

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression