Description

Ensembl ID BVRB_1g001910 Gene ID Accession -
Symbol Alias - Full Name Dicer-like 1
Status Confidence Length 13465 bases Strand Plus strand
Position 1 : 2014245 - 2027709 RNA binding domain ResIII , DEAD , DND1_DSRM , dsrm , Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
KMT20183 ResIII PF04851 1.4e-12 1
KMT20183 DEAD PF00270 4.8e-12 2
KMT20183 PAZ PF02170 1.8e-08 3
KMT20183 Dicer_dimer PF03368 4.7e-22 4
KMT20182 ResIII PF04851 2.2e-12 1
KMT20182 DEAD PF00270 5.3e-12 2
KMT20182 DND1_DSRM PF14709 1.2e-15 3
KMT20182 dsrm PF00035 1.3e-18 4
KMT20182 dsrm PF00035 1.3e-18 5
KMT20182 Ribonucleas_3_3 PF14622 7.1e-27 6
KMT20182 PAZ PF02170 2.8e-23 7
KMT20182 Dicer_dimer PF03368 4.2e-24 8
KMT20182 Ribonuclease_3 PF00636 9.9e-56 9
KMT20182 Ribonuclease_3 PF00636 9.9e-56 10
KMT20184 DND1_DSRM PF14709 9.2e-17 1
KMT20184 dsrm PF00035 7.6e-18 2
KMT20184 dsrm PF00035 7.6e-18 3
KMT20184 Ribonucleas_3_3 PF14622 2.6e-29 4
KMT20184 Ribonuclease_3 PF00636 3.4e-57 5
KMT20184 Ribonuclease_3 PF00636 3.4e-57 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- KMT20183 4760 1331aa KMT20183
- KMT20184 2252 570aa KMT20184
- KMT20182 6652 1972aa KMT20182

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_1g001910beta_vulgarisKMT1097496.629292.1348beta_vulgarisKMT201824.361054.15822
BVRB_1g001910beta_vulgarisKMT0358235.768721.9822beta_vulgarisKMT2018228.549717.5456
BVRB_1g001910beta_vulgarisKMT0358343.134827.8997beta_vulgarisKMT2018234.888422.5659
BVRB_1g001910beta_vulgarisKMT1275846.551728.7356beta_vulgarisKMT201828.215015.07099
BVRB_1g001910beta_vulgarisKMT1275951.267630.4225beta_vulgarisKMT201829.229215.47667
BVRB_1g001910beta_vulgarisKMT1471549.573332.4324beta_vulgarisKMT2018235.344823.1237
BVRB_1g001910beta_vulgarisKMS9535444.766829.2228beta_vulgarisKMT2018221.906714.3002

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
BVRB_1g001910beta_vulgarisKMT2018217.241413.4381marchantia_polymorphaPTQ3052866.406251.7578
BVRB_1g001910beta_vulgarisKMT2018276.673465.9736marchantia_polymorphaPTQ4935273.505163.2474
BVRB_1g001910beta_vulgarisKMT2018285.547776.7748theobroma_cacaoEOX9554384.055875.436
BVRB_1g001910beta_vulgarisKMT2018284.939175.5578citrullus_lanatusCla97C05G079940.184.213274.912
BVRB_1g001910beta_vulgarisKMT2018270.486864.3509ficus_caricaFCD_00035356-RA:cds91.267283.3224
BVRB_1g001910beta_vulgarisKMT2018267.241459.432ficus_caricaFCD_00012132-RA:cds78.975669.8035
BVRB_1g001910beta_vulgarisKMT2018284.888476.9777prunus_dulcisVVA3596084.974677.0558
BVRB_1g001910beta_vulgarisKMT2018276.318567.1907oryza_longistaminataKN539051.1_FGP00483.149273.2044
BVRB_1g001910beta_vulgarisKMT2018278.85469.0162oryza_rufipogonORUFI03G01450.181.79971.5939
BVRB_1g001910beta_vulgarisKMT2018284.229275.2535lupinus_angustifoliusOIW2138783.635474.7231
BVRB_1g001910beta_vulgarisKMT2018285.953376.6227manihot_esculentaOAY4891985.519776.2361
BVRB_1g001910beta_vulgarisKMT2018281.490973.4787medicago_truncatulaAES8283885.478777.0745
BVRB_1g001910beta_vulgarisKMT2018277.332769.3205ananas_comosusAco016650.1.mrna182.033373.5342
BVRB_1g001910beta_vulgarisKMT2018278.14468.4077oryza_glaberrimaORGLA03G0014800.181.88171.6791
BVRB_1g001910beta_vulgarisKMT2018279.918970.3854oryza_brachyanthaOB03G11680.182.040672.254
BVRB_1g001910beta_vulgarisKMT2018284.381375.1521vigna_unguiculataVigun09g003800.1.v1.284.984775.6895
BVRB_1g001910beta_vulgarisKMT201827.606496.08519glycine_maxKRH3026973.170758.5366
BVRB_1g001910beta_vulgarisKMT2018284.279975.4057glycine_maxKRG9726685.449976.4524
BVRB_1g001910beta_vulgarisKMT2018284.229275.2535glycine_maxKRH6898385.310776.2198
BVRB_1g001910beta_vulgarisKMT201825.527384.91886glycine_maxKRH3025088.617978.8618
BVRB_1g001910beta_vulgarisKMT2018282.809374.1379vigna_radiataVradi05g00280.184.743175.8692
BVRB_1g001910beta_vulgarisKMT2018278.904769.4726triticum_turgidumTRITD5Av1G245840.178.904769.4726
BVRB_1g001910beta_vulgarisKMT2018278.904769.574triticum_turgidumTRITD4Bv1G194690.178.665369.363
BVRB_1g001910beta_vulgarisKMT2018284.78776.6734prunus_persicaONI2366084.8376.7123
BVRB_1g001910beta_vulgarisKMT2018285.14276.4706quercus_lobataQL08p047944:mrna82.022573.6688
BVRB_1g001910beta_vulgarisKMT2018215.770813.9452quercus_lobataQL08p047933:mrna86.388976.3889
BVRB_1g001910beta_vulgarisKMT2018282.200874.0365ipomoea_trilobaitb11g23510.t184.164175.8048
BVRB_1g001910beta_vulgarisKMT2018212.474610.5477helianthus_annuusmRNA:HanXRQr2_Chr05g021529174.096462.6506
BVRB_1g001910beta_vulgarisKMT2018278.85470.2333cynara_cardunculusKVH9107381.49972.5891
BVRB_1g001910beta_vulgarisKMT2018285.395575.9635populus_trichocarpaPotri.002G181400.1.v4.185.525776.0792
BVRB_1g001910beta_vulgarisKMT2018278.194768.4077oryza_indicaBGIOSGA011556-PA81.890671.641
BVRB_1g001910beta_vulgarisKMT2018278.549769.1176lolium_perennecds.KYUSt_chr4.5189580.761271.0636
BVRB_1g001910beta_vulgarisKMT2018282.150173.9858pisum_sativumPsat3g000680.1.cds86.170277.6064
BVRB_1g001910beta_vulgarisKMT2018280.324570.5882brassica_junceacds.BjuB03g28210S84.255374.0426
BVRB_1g001910beta_vulgarisKMT2018278.600468.9148leersia_perrieriLPERR03G01580.179.283969.5141
BVRB_1g001910beta_vulgarisKMT2018279.665370.0304setaria_viridisTKV9853381.272671.4434
BVRB_1g001910beta_vulgarisKMT2018283.468674.8479malus_domestica_goldenmRNA:MD01G007070084.022575.3446
BVRB_1g001910beta_vulgarisKMT2018218.00215.1623malus_domestica_goldenmRNA:MD07G013350065.377555.0645
BVRB_1g001910beta_vulgarisKMT2018221.85619.574malus_domestica_goldenmRNA:MD07G013340089.23479.9172
BVRB_1g001910beta_vulgarisKMT2018221.247519.1684malus_domestica_goldenmRNA:MD07G013320087.110278.5863
BVRB_1g001910beta_vulgarisKMT201828.417857.35294malus_domestica_goldenmRNA:MD07G013330089.247377.957
BVRB_1g001910beta_vulgarisKMT2018283.874275.355quercus_subercds-POE94878.184.907676.2834
BVRB_1g001910beta_vulgarisKMT2018215.56813.5396quercus_subercds-POE94877.182.526971.7742
BVRB_1g001910beta_vulgarisKMT2018278.194768.4584oryza_nivaraONIVA02G30680.181.890671.6941
BVRB_1g001910beta_vulgarisKMT2018284.989976.1156citrus_clementinaESR5793985.379576.4646
BVRB_1g001910beta_vulgarisKMT2018279.563969.9797setaria_italicaKQK9288181.169271.3916
BVRB_1g001910beta_vulgarisKMT2018281.28871.1968arabidopsis_hallerig01823.t183.926773.5079
BVRB_1g001910beta_vulgarisKMT2018246.85641.5314avena_sativa_ot3098cds.AVESA.00001b.r3.4Cg0000965.485.161375.4839
BVRB_1g001910beta_vulgarisKMT2018278.651168.8641avena_sativa_ot3098cds.AVESA.00001b.r3.4Ag0002557.579.866169.9279
BVRB_1g001910beta_vulgarisKMT2018278.651168.9655avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0003526.179.907370.067
BVRB_1g001910beta_vulgarisKMT201829.482767.1501asparagus_officinalisONK6379671.923154.2308
BVRB_1g001910beta_vulgarisKMT2018217.697813.2353selaginella_moellendorffiiEFJ3306166.603149.8092
BVRB_1g001910beta_vulgarisKMT2018217.596313.1339selaginella_moellendorffiiEFJ0971066.221449.4275
BVRB_1g001910beta_vulgarisKMT2018281.795173.073fraxinus_excelsiorFRAEX38873_v2_000356630.1.cds84.185875.2088
BVRB_1g001910beta_vulgarisKMT2018248.833742.7485aegilops_tauschiiAET4Gv20810300.874.47865.1972
BVRB_1g001910beta_vulgarisKMT2018278.397668.6105oryza_meridionalisOMERI03G01650.181.197571.0609
BVRB_1g001910beta_vulgarisKMT2018282.403671.9067amborella_trichopodaERN0809779.50169.3738
BVRB_1g001910beta_vulgarisKMT2018280.121770.5375sorghum_bicolorKXG4031381.907772.1099
BVRB_1g001910beta_vulgarisKMT2018284.127875.1014corchorus_capsularisOMO6418384.989875.8709
BVRB_1g001910beta_vulgarisKMT2018289.959484.9391chenopodium_quinoaAUR62004575-RA:cds94.462289.1906
BVRB_1g001910beta_vulgarisKMT2018290.872286.5112chenopodium_quinoaAUR62022688-RA:cds95.066390.504
BVRB_1g001910beta_vulgarisKMT2018285.192776.7748juglans_regiacds.Jr07_10040_p184.210575.8897
BVRB_1g001910beta_vulgarisKMT2018279.766770.1826brassica_oleraceaBo5g002780.184.569974.4086
BVRB_1g001910beta_vulgarisKMT2018270.841862.1197digitaria_exilisDexi9B01G0048210.1:cds80.195270.3215
BVRB_1g001910beta_vulgarisKMT2018267.849960.142digitaria_exilisDexi9A01G0048790.1:cds81.189371.966
BVRB_1g001910beta_vulgarisKMT201827566.1765cannabis_sativa_femalecds.evm.model.02.115083.136673.3558
BVRB_1g001910beta_vulgarisKMT2018274.036565.6694cannabis_sativa_femalecds.evm.model.02.115883.285873.8734
BVRB_1g001910beta_vulgarisKMT2018265.111658.0629eragrostis_curvulaTVU4856788.612879.02
BVRB_1g001910beta_vulgarisKMT2018279.766770.2333eragrostis_curvulaTVU4857881.927172.1354
BVRB_1g001910beta_vulgarisKMT2018281.186671.3489eutrema_salsugineumESQ3672283.515973.3959
BVRB_1g001910beta_vulgarisKMT2018278.651168.8641avena_sativa_sangAVESA.00010b.r2.4AG0627980.1.CDS79.866169.9279
BVRB_1g001910beta_vulgarisKMT2018278.651168.9655avena_sativa_sangAVESA.00010b.r2.1DG0124570.1.CDS79.907370.067
BVRB_1g001910beta_vulgarisKMT2018246.85641.5314avena_sativa_sangAVESA.00010b.r2.4CG1271960.1.CDS85.161375.4839
BVRB_1g001910beta_vulgarisKMT2018281.490973.5801trifolium_pratenseTp57577_TGAC_v2_mRNA495685.935877.5936
BVRB_1g001910beta_vulgarisKMT2018278.803268.9655oryza_barthiiOBART03G01710.181.789571.5789
BVRB_1g001910beta_vulgarisKMT2018280.780970.8418solanum_lycopersicumSolyc10g005130.3.182.071171.9732
BVRB_1g001910beta_vulgarisKMT2018278.803269.5233hordeum_vulgareHORVU.MOREX.r3.4HG0412600.178.843269.5586
BVRB_1g001910beta_vulgarisKMT2018284.279974.9493vigna_angularisKOM2911784.925975.5238
BVRB_1g001910beta_vulgarisKMT2018284.330675.7607gossypium_raimondiiKJB0957685.282176.6154
BVRB_1g001910beta_vulgarisKMT2018279.563970.0811panicum_halliiPUZ4312281.506571.7922
BVRB_1g001910beta_vulgarisKMT2018283.265774.3915cajanus_cajanC.cajan_10975.t85.833876.6858
BVRB_1g001910beta_vulgarisKMT2018280.020370.1318brassica_rapa_ro18A10p000930.1_BraROA.182.445172.257
BVRB_1g001910beta_vulgarisKMT2018284.077174.4929rosa_chinensisPRQ5862484.938575.2561
BVRB_1g001910beta_vulgarisKMT2018281.592372.0081musa_acuminataMa08_p12120.283.54173.7279
BVRB_1g001910beta_vulgarisKMT2018283.265774.5436corymbia_citriodoracds-KAF8033573.185.077776.1658
BVRB_1g001910beta_vulgarisKMT2018279.817470.3347eragrostis_tefEt_4A_032425.CDS82.021972.2772
BVRB_1g001910beta_vulgarisKMT2018279.766770.3347eragrostis_tefEt_4B_039236.CDS81.969872.2772
BVRB_1g001910beta_vulgarisKMT2018279.056869.1176oryza_punctataOPUNC03G01580.281.49571.2493
BVRB_1g001910beta_vulgarisKMT2018280.273871.6531daucus_carotaKZM9051679.70871.148
BVRB_1g001910beta_vulgarisKMT2018285.902677.0284pistacia_veracds-EVM0016160.185.383176.5625
BVRB_1g001910beta_vulgarisKMT2018279.361170.1318echinochloa_crusgalliscaffold104.22.cds75.421766.6506
BVRB_1g001910beta_vulgarisKMT2018279.310369.8783echinochloa_crusgalliscaffold52.253.cds80.3770.8119
BVRB_1g001910beta_vulgarisKMT2018279.310370.0304echinochloa_crusgalliscaffold254.52.cds78.751369.5368
BVRB_1g001910beta_vulgarisKMT2018278.904769.6755brachypodium_distachyonKQK2392680.621871.1917
BVRB_1g001910beta_vulgarisKMT2018281.186671.0953arabidopsis_lyratafgenesh1_pg.C_scaffold_100011681.600471.4577
BVRB_1g001910beta_vulgarisKMT2018275.152166.785triticum_dicoccoidesTRIDC4BG058470.184.444475.0427
BVRB_1g001910beta_vulgarisKMT2018278.803269.3712triticum_dicoccoidesTRIDC5AG073560.179.326269.8315
BVRB_1g001910beta_vulgarisKMT2018278.245468.4584oryza_sativaOs03t0121800-0181.943771.6941
BVRB_1g001910beta_vulgarisKMT2018280.628870.7911solanum_tuberosumPGSC0003DMT40002930183.072172.9363
BVRB_1g001910beta_vulgarisKMT2018281.034571.0446arabidopsis_thalianaAT1G01040.283.664973.3508
BVRB_1g001910beta_vulgarisKMT2018279.665370.2333zea_maysZm00001eb001570_P00181.356871.7245
BVRB_1g001910beta_vulgarisKMT2018284.533576.3692actinidia_chinensisPSS0510585.268577.0332
BVRB_1g001910beta_vulgarisKMT2018282.910874.5943olea_europaeaOE9A043227C184.935176.4156
BVRB_1g001910beta_vulgarisKMT2018281.490972.7688lactuca_sativacds-PLY93172.183.654474.7007
BVRB_1g001910beta_vulgarisKMT2018278.904769.574triticum_aestivumTraesCS4B02G347300.178.546269.2579
BVRB_1g001910beta_vulgarisKMT2018278.701869.4219triticum_aestivumTraesCS4D02G342300.176.679867.6383
BVRB_1g001910beta_vulgarisKMT2018278.955469.5233triticum_aestivumTraesCS5A02G516000.178.955469.5233
BVRB_1g001910beta_vulgarisKMT2018281.896672.1602nicotiana_attenuataOIS9936383.419473.5021
BVRB_1g001910beta_vulgarisKMT2018284.330675.0507phaseolus_vulgarisESW1103585.282175.8974
BVRB_1g001910beta_vulgarisKMT2018277.890568.002brassica_napusCDX9000284.768274.0066
BVRB_1g001910beta_vulgarisKMT2018277.535568.0527brassica_napusCDY1520784.521874.1846
BVRB_1g001910beta_vulgarisKMT2018220.182617.0892arabis_alpinaKFK2414586.899673.5808
BVRB_1g001910beta_vulgarisKMT2018211.61269.6856arabis_alpinaKFK2371080.918767.4912
BVRB_1g001910beta_vulgarisKMT2018276.267767.1907arabis_alpinaKFK4249383.975473.981
BVRB_1g001910beta_vulgarisKMT2018284.78775.5578cucumis_sativusKGN5632884.062374.912
BVRB_1g001910beta_vulgarisKMT2018271.906765.8215corylus_avellanaCav07g08430.t191.602183.8501
BVRB_1g001910beta_vulgarisKMT2018212.52549.93915corylus_avellanaCav07g08440.t160.539248.0392
BVRB_1g001910beta_vulgarisKMT2018280.679570.6389capsicum_annuumPHT7007283.211372.8557
BVRB_1g001910beta_vulgarisKMT2018278.194768.4584oryza_glumipatulaOGLUM03G01690.181.890671.6941
BVRB_1g001910beta_vulgarisKMT2018265.111658.4686saccharum_spontaneumSspon.01G0001230-3D-mRNA-1:cds88.065879.0809
BVRB_1g001910beta_vulgarisKMT2018251.419944.7262saccharum_spontaneumSspon.01G0001230-2C-mRNA-1:cds79.218868.9062
BVRB_1g001910beta_vulgarisKMT2018215.415812.6775nymphaea_colorataNC10G0232870.1:cds45.50937.4251
BVRB_1g001910beta_vulgarisKMT2018285.649177.4341vitis_viniferaVitvi15g00864_P00185.562377.3556
BVRB_1g001910beta_vulgarisKMT2018284.330676.3185prunus_aviumPav_sc0001046.1_g510.1.mk:mrna84.803776.7466
BVRB_1g001910beta_vulgarisKMT2018280.628870.9939camelina_sativaCsa14g002140.182.468972.6141
BVRB_1g001910beta_vulgarisKMT2018277.991968.5091camelina_sativaCsa17g001520.181.289671.4059
BVRB_1g001910beta_vulgarisKMT2018279.259669.574camelina_sativaCsa03g002190.183.3673.1733
BVRB_1g001910beta_vulgarisKMT2018282.150173.428sesamum_indicumSIN_1002242.t82.568873.8022
BVRB_1g001910beta_vulgarisKMT2018221.044612.7789chara_brauniiGBG7775225.776415.6522
BVRB_1g001910beta_vulgarisKMT201829.989866.28803chara_brauniiGBG8190826.336916.5775
BVRB_1g001910beta_vulgarisKMT2018251.57244.0669kalanchoe_fedtschenkoiKaladp0072s0008.1.v1.178.654367.208
BVRB_1g001910beta_vulgarisKMT201827.65726.89655kalanchoe_fedtschenkoiKaladp0072s0009.1.v1.189.349180.4734
BVRB_1g001910beta_vulgarisKMT2018280.730272.0588dioscorea_rotundataDRNTG_02680.183.966274.9473
BVRB_1g001910beta_vulgarisKMT2018248.42840.9736physcomitrium_patensPp3c1_24960V3.175.613663.9747
BVRB_1g001910beta_vulgarisKMT2018274.239363.3367physcomitrium_patensPp3c2_15900V3.278.456666.9346
BVRB_1g001910beta_vulgarisKMT2018247.971639.9087physcomitrium_patensPp3c1_24950V3.175.862163.1115
BVRB_1g001910beta_vulgarisKMT2018278.904769.4219secale_cerealeSECCE5Rv1G0370260.178.46769.0368
BVRB_1g001910beta_vulgarisKMT2018282.910871.9574papaver_somniferumRZC6957782.701171.7754
BVRB_1g001910beta_vulgarisKMT2018225.557822.4138papaver_somniferumRZC7402388.266277.4081

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression