RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	BVRB_012920	Gene ID		Accession	-
Symbol		Alias	-	Full Name	hypothetical protein isoform A
Status	Confidence	Length	4315 bases	Strand	Plus strand
Position	0416.scaffold00936 : 18246 - 22560	RNA binding domain	SRP54
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
KMS95050	SRP54	PF00448	1.2e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	KMS95050	2983	256aa	KMS95050
-	KMS95051	1103	230aa	KMS95051

Gene Model

Click here to download BVRB_012920's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download BVRB_012920's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_012920

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
BVRB_012920	beta_vulgaris	KMS95050	19.5312	15.2344	fraxinus_excelsior	FRAEX38873_v2_000081730.1.cds	68.4931	53.4247

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression