Description

Ensembl ID Al_scaffold_0008_612 Gene ID Accession -
Symbol Alias - Full Name Predicted protein (Fragment)
Status Confidence Length 1344 bases Strand Plus strand
Position 8 : 4016069 - 4017412 RNA binding domain Efg1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
Al_scaffold_0008_612 Efg1 PF10153 2.2e-17 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- Al_scaffold_0008_612 738 246aa Al_scaffold_0008_612

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Al_scaffold_0008_612arabidopsis_lyratafgenesh1_pg.C_scaffold_800051535.672533.3333arabidopsis_lyrataAl_scaffold_0008_61224.796723.1707
Al_scaffold_0008_612arabidopsis_lyratascaffold_800672.192.993690.4459arabidopsis_lyrataAl_scaffold_0008_61259.349657.7236
Al_scaffold_0008_612arabidopsis_lyratafgenesh2_kg.37__5__AT5G43720.175.694473.9583arabidopsis_lyrataAl_scaffold_0008_61288.617986.5854
Al_scaffold_0008_612arabidopsis_lyratafgenesh2_kg.1__353__AT1G04230.157.62250.9146arabidopsis_lyrataAl_scaffold_0008_61276.829367.8862

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61262.601647.1545marchantia_polymorphaPTQ4677336.065627.1663
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61257.317141.0569papaver_somniferumRZC4900933.412323.9336
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.577263.4146cannabis_sativa_femalecds.novel_model_6294_5bd9a17a50.277843.3333
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.390264.6341ficus_caricaFCD_00009181-RA:cds54.14247.0414
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61269.918756.5041beta_vulgarisKMT1266954.258743.8486
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.829364.2276cucumis_meloMELO3C006479.2.151.081142.7027
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.829364.6341cucumis_sativusKGN5691956.586847.6048
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796763.4146populus_trichocarpaPotri.010G078500.1.v4.153.179245.0867
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.203362.1951populus_trichocarpaPotri.008G160800.1.v4.154.252244.868
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.829364.6341citrullus_lanatusCla97C05G085730.157.099748.0363
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61285.772482.9268arabidopsis_thalianaAT5G43720.164.133762.0061
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.983763.0081prunus_dulcisVVA3329952.298944.5402
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61284.146380.4878brassica_napusCDX9472057.983255.4622
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61281.300876.0163brassica_napusCDX9689655.401751.8006
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61262.195157.7236brassica_napusCDY6850356.2552.2059
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61284.146380.4878brassica_napusCDY2233759.482856.8966
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.983762.1951malus_domestica_goldenmRNA:MD16G018070052.601244.2197
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.422865.8537malus_domestica_goldenmRNA:MD13G017970053.561346.1538
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.983763.0081prunus_persicaONI2647052.298944.5402
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61284.552880.8943brassica_junceacds.BjuA06g01250S59.770157.1839
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61280.894376.4228brassica_junceacds.BjuA02g14060S55.586652.514
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61265.853755.2846cajanus_cajanC.cajan_07124.t47.647140
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61270.731757.7236glycine_maxKRH3437352.727343.0303
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.544758.9431glycine_maxKRG9243264.705953.3088
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61270.731756.9106lupinus_angustifoliusOIW0724546.774237.6344
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.544758.5366lupinus_angustifoliusOIW0776549.438240.4494
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.951259.7561phaseolus_vulgarisESW1587553.799444.6809
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.544760.1626vigna_angularisKOM3558450.867142.7746
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61268.292756.5041pisum_sativumPsat6g114920.1.cds46.796738.7187
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61238.211432.1138vigna_radiataVradi08g14560.145.410638.1642
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.951260.1626vigna_unguiculataVigun07g170500.1.v1.253.636444.8485
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796764.2276solanum_lycopersicumSolyc09g083270.3.150.273243.1694
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.203363.8211manihot_esculentaOAY2803754.411846.1765
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.609862.1951manihot_esculentaOAY5565254.705945
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.390263.0081capsicum_annuumPHT8580254.302745.9941
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796764.2276solanum_tuberosumPGSC0003DMT40001560853.025945.5331
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.951258.9431sesamum_indicumSIN_1021842.t51.603542.2741
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61269.105757.7236lactuca_sativacds-PLY97186.148.295540.3409
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61269.512258.5366helianthus_annuusmRNA:HanXRQr2_Chr12g055423150.892942.8571
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61272.764258.5366ananas_comosusAco017398.1.mrna155.246944.4444
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61268.699254.065asparagus_officinalisONK6737152.484541.3043
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61272.764256.5041amborella_trichopodaERN0144551.734140.1734
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.016364.6341vitis_viniferaVitvi05g00626_P00155.489647.181
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.577265.4472ipomoea_trilobaitb13g18550.t253.392347.4926
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61261.382145.5285physcomitrium_patensPp3c2_37690V3.134.162925.3394
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.577261.7886gossypium_raimondiiKJB3452052.616344.186
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.016365.0406gossypium_raimondiiKJB7230953.735645.977
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.170762.1951prunus_aviumPav_sc0000998.1_g170.1.mk:mrna51.724143.9655
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.577259.7561nicotiana_attenuataOIS9884615.058212.2296
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61272.764263.0081coffea_canephoraCDO9914553.273846.131
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.016365.4472theobroma_cacaoEOY0587251.944444.7222
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.390262.6016fraxinus_excelsiorFRAEX38873_v2_000188260.1.cds50.13742.1918
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61269.105757.7236cynara_cardunculusKVG618075041.7647
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.203363.4146juglans_regiacds.Jr12_15190_p155.389246.7066
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796763.0081juglans_regiacds.Jr12_15180_p155.421746.6867
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.390264.2276pistacia_veracds-EVM0000561.154.626947.1642
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61283.739878.8618arabis_alpinaKFK3170053.092850
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796763.8211eucalyptus_grandisKCW6045355.089847.006
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61265.040650.813chenopodium_quinoaAUR62040390-RA:cds52.805341.2541
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.609866.2602citrus_clementinaESR3332955.357148.5119
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61284.959481.3008eutrema_salsugineumESQ4465763.14260.423
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61272.357759.3496dioscorea_rotundataDRNTG_02508.154.268344.5122
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796764.2276corymbia_citriodoracds-KAF8016410.155.255347.4474
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61270.731758.1301musa_acuminataMa08_p20360.154.037344.4099
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.016365.0406rosa_chinensisPRQ3222055.820947.7612
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61283.333379.2683brassica_oleraceaBo7g065670.157.42354.6218
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61280.894376.8293brassica_oleraceaBo2g119410.161.419858.3333
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796763.4146quercus_lobataQL06p015098:mrna53.958945.7478
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61276.016365.8537corchorus_capsularisOMO5474347.341841.0127
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61272.357759.3496kalanchoe_fedtschenkoiKaladp1006s0016.1.v1.153.453543.8438
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61288.617986.5854arabidopsis_hallerig17562.t166.261464.7416
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61248.780530.0813ostreococcus_lucimarinusABO9720140.540525
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61266.666754.878daucus_carotaKZM8314152.564143.2692
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61271.544752.0325nymphaea_colorataNC1G0108060.1:cds53.658539.0244
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61269.918752.439nymphaea_colorataNC6G0040340.1:cds47.382935.5372
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61286.991982.5203camelina_sativaCsa18g010150.165.045661.7021
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61286.991982.1138camelina_sativaCsa11g071170.165.045661.3982
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61286.178981.7073camelina_sativaCsa20g067650.164.437761.0942
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61260.162643.0894selaginella_moellendorffiiEFJ3546042.651330.5476
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61284.552880.8943brassica_rapa_ro18A06p056630.1_BraROA.159.770157.1839
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61280.894376.4228brassica_rapa_ro18A02p040210.1_BraROA.159.759856.4565
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.390260.9756actinidia_chinensisPSS0140852.890243.3526
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61273.577262.6016actinidia_chinensisPSS1597652.312144.5087
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796763.8211olea_europaeaOE9A036261C153.644345.7726
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61274.796764.2276olea_europaeaOE9A084799C253.644346.0641
Al_scaffold_0008_612arabidopsis_lyrataAl_scaffold_0008_61275.203363.8211quercus_subercds-POF22596.148.051940.7792

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression