| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | Al_scaffold_0003_785 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
Small nuclear ribonucleoprotein family protein |
| Status |
Confidence |
Length |
862 bases |
Strand |
Plus strand |
| Position |
3 : 3196309 - 3197170 |
RNA binding domain |
LSM |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| Al_scaffold_0003_785 |
LSM |
PF01423 |
1.2e-17 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
Al_scaffold_0003_785 |
309 |
102aa |
Al_scaffold_0003_785 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0001_239 | 80.3419 | 74.359 | arabidopsis_lyrata | Al_scaffold_0003_785 | 92.1569 | 85.2941 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | fgenesh2_kg.6__3408__AT4G02840.1 | 80.1724 | 75 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 85.2941 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | fgenesh1_pg.C_scaffold_1001871 | 33.0986 | 15.493 | arabidopsis_lyrata | Al_scaffold_0003_785 | 46.0784 | 21.5686 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | fgenesh2_kg.2__1913__AT1G76300.1 | 34.8837 | 17.0543 | arabidopsis_lyrata | Al_scaffold_0003_785 | 44.1176 | 21.5686 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | fgenesh1_pm.C_scaffold_6002153 | 27.2727 | 16.0839 | arabidopsis_lyrata | Al_scaffold_0003_785 | 38.2353 | 22.549 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 70.5882 | 53.9216 | chondrus_crispus | CDF39534 | 58.5366 | 44.7154 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 80.3922 | 66.6667 | chlamydomonas_reinhardtii | PNW71700 | 71.9298 | 59.6491 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 80.3922 | marchantia_polymorpha | PTQ48594 | 81.5789 | 71.9298 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 89.2157 | 82.3529 | beta_vulgaris | KMT06131 | 79.1304 | 73.0435 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 92.1569 | arabidopsis_thaliana | AT3G07590.2 | 84.2105 | 82.4561 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 72.549 | 68.6274 | brassica_napus | CDX74038 | 69.1589 | 65.4206 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 87.2549 | 83.3333 | brassica_napus | CDY22123 | 80.1802 | 76.5766 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 89.2157 | brassica_napus | CDY07986 | 72.1805 | 68.4211 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | brassica_napus | CDY28033 | 81.3559 | 78.8136 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | brassica_napus | CDY35948 | 80.6723 | 78.1513 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 90.1961 | brassica_juncea | cds.BjuB07g49870S | 80.6723 | 77.3109 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | brassica_juncea | cds.BjuB01g03720S | 79.3388 | 76.8595 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 89.2157 | 84.3137 | sesamum_indicum | SIN_1014289.t | 79.8246 | 75.4386 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 89.2157 | 84.3137 | sesamum_indicum | SIN_1000117.t.cds1 | 79.8246 | 75.4386 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 46.0784 | 27.451 | caenorhabditis_elegans | F40F8.11a.1 | 9.95763 | 5.9322 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 92.1569 | 85.2941 | asparagus_officinalis | ONK68092 | 82.4561 | 76.3158 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 80.3922 | 68.6274 | homo_sapiens | ENSP00000300413 | 68.9076 | 58.8235 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 84.3137 | 65.6863 | drosophila_melanogaster | FBpp0075684 | 69.3548 | 54.0323 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 80.3922 | physcomitrium_patens | Pp3c5_16280V3.2 | 52.8409 | 46.5909 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 81.3726 | physcomitrium_patens | Pp3c13_22270V3.2 | 81.5789 | 72.807 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 86.2745 | gossypium_raimondii | KJB42686 | 60.7843 | 57.5163 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 84.3137 | theobroma_cacao | EOX93608 | 25.9053 | 23.9554 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 78.4314 | 64.7059 | ciona_savignyi | ENSCSAVP00000007658 | 64 | 52.8 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 81.3726 | 75.4902 | fraxinus_excelsior | FRAEX38873_v2_000097630.1.cds | 77.5701 | 71.9626 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 56.8627 | 51.9608 | fraxinus_excelsior | FRAEX38873_v2_000302680.1.cds | 73.4177 | 67.0886 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 86.2745 | fraxinus_excelsior | FRAEX38873_v2_000237320.1.cds | 81.5789 | 77.193 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 89.2157 | 83.3333 | chenopodium_quinoa | AUR62039911-RA:cds | 32.852 | 30.6859 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 77.451 | 59.8039 | galdieria_sulphuraria | EME28348 | 64.7541 | 50 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 92.1569 | 89.2157 | eutrema_salsugineum | ESQ32487 | 81.7391 | 79.1304 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 92.1569 | 85.2941 | dioscorea_rotundata | DRNTG_07418.1 | 82.4561 | 76.3158 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 90.1961 | brassica_oleracea | Bo3g061360.1 | 81.3559 | 77.9661 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 90.1961 | brassica_oleracea | Bo1g147260.1 | 81.3559 | 77.9661 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | brassica_oleracea | Bo5g141350.1 | 62.7451 | 60.7843 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 85.2941 | 79.4118 | corchorus_capsularis | OMO89566 | 81.3084 | 75.7009 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 82.3529 | kalanchoe_fedtschenkoi | Kaladp0051s0036.1.v1.1 | 81.5789 | 73.6842 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 93.1373 | arabidopsis_halleri | g11805.t1 | 84.2105 | 83.3333 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 78.4314 | 66.6667 | ostreococcus_lucimarinus | ABO95526 | 70.1754 | 59.6491 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 90.1961 | camelina_sativa | Csa19g011370.1 | 81.3559 | 77.9661 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | camelina_sativa | Csa01g008660.1 | 81.3559 | 78.8136 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 92.1569 | camelina_sativa | Csa15g009330.1 | 80 | 78.3333 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 90.1961 | 82.3529 | selaginella_moellendorffii | EFJ08912 | 80.7018 | 73.6842 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 90.1961 | 82.3529 | selaginella_moellendorffii | EFJ29766 | 80.7018 | 73.6842 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 90.1961 | brassica_rapa_ro18 | A01p055890.1_BraROA.1 | 81.3559 | 77.9661 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 91.1765 | brassica_rapa_ro18 | A05p050470.1_BraROA.1 | 81.3559 | 78.8136 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 94.1176 | 89.2157 | brassica_rapa_ro18 | A03p037490.1_BraROA.1 | 57.1429 | 54.1667 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 90.1961 | 85.2941 | olea_europaea | OE9A052832C1 | 59.3548 | 56.129 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 86.2745 | olea_europaea | OE9A074212C4 | 81.5789 | 77.193 |
| Al_scaffold_0003_785 | arabidopsis_lyrata | Al_scaffold_0003_785 | 91.1765 | 86.2745 | olea_europaea | OE9A061594C2 | 81.5789 | 77.193 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
