RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	AVESA.00001b.r3.6Ag0002785	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Nop , NOP5NT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	AVESA.00001b.r3.6Ag0002785.2	1887	598aa	cds.AVESA.00001b.r3.6Ag0002785.2
-	AVESA.00001b.r3.6Ag0002785.4	2046	597aa	cds.AVESA.00001b.r3.6Ag0002785.4
-	AVESA.00001b.r3.6Ag0002785.1	2176	599aa	cds.AVESA.00001b.r3.6Ag0002785.1
-	AVESA.00001b.r3.6Ag0002785.3	1763	587aa	cds.AVESA.00001b.r3.6Ag0002785.3
-	AVESA.00001b.r3.6Ag0002785.6	2110	450aa	cds.AVESA.00001b.r3.6Ag0002785.6
-	AVESA.00001b.r3.6Ag0002785.5	1610	536aa	cds.AVESA.00001b.r3.6Ag0002785.5

Gene Model

Click here to download AVESA.00001b.r3.6Ag0002785's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AVESA.00001b.r3.6Ag0002785's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.6Ag0002785

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.6Ag0002785

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression