RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	AVESA.00001b.r3.4Dg0001232	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	Nop , NOP5NT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	AVESA.00001b.r3.4Dg0001232.9	1787	340aa	cds.AVESA.00001b.r3.4Dg0001232.9
-	AVESA.00001b.r3.4Dg0001232.8	1607	509aa	cds.AVESA.00001b.r3.4Dg0001232.8
-	AVESA.00001b.r3.4Dg0001232.7	2433	174aa	cds.AVESA.00001b.r3.4Dg0001232.7
-	AVESA.00001b.r3.4Dg0001232.5	2861	204aa	cds.AVESA.00001b.r3.4Dg0001232.5
-	AVESA.00001b.r3.4Dg0001232.2	6715	544aa	cds.AVESA.00001b.r3.4Dg0001232.2
-	AVESA.00001b.r3.4Dg0001232.10	3425	176aa	cds.AVESA.00001b.r3.4Dg0001232.10
-	AVESA.00001b.r3.4Dg0001232.3	2080	340aa	cds.AVESA.00001b.r3.4Dg0001232.3
-	AVESA.00001b.r3.4Dg0001232.1	2072	544aa	cds.AVESA.00001b.r3.4Dg0001232.1
-	AVESA.00001b.r3.4Dg0001232.4	1979	459aa	cds.AVESA.00001b.r3.4Dg0001232.4
-	AVESA.00001b.r3.4Dg0001232.6	3253	159aa	cds.AVESA.00001b.r3.4Dg0001232.6

Gene Model

Click here to download AVESA.00001b.r3.4Dg0001232's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AVESA.00001b.r3.4Dg0001232's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.4Dg0001232

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.4Dg0001232

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression