RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	AVESA.00001b.r3.4Ag0001040	Gene ID		Accession	-
Symbol		Alias	-	Full Name
Status	Confidence	Length		Strand
Position		RNA binding domain	RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	AVESA.00001b.r3.4Ag0001040.6	3348	870aa	cds.AVESA.00001b.r3.4Ag0001040.6
-	AVESA.00001b.r3.4Ag0001040.5	4176	457aa	cds.AVESA.00001b.r3.4Ag0001040.5
-	AVESA.00001b.r3.4Ag0001040.3	4218	887aa	cds.AVESA.00001b.r3.4Ag0001040.3
-	AVESA.00001b.r3.4Ag0001040.2	4308	1224aa	cds.AVESA.00001b.r3.4Ag0001040.2
-	AVESA.00001b.r3.4Ag0001040.4	3791	767aa	cds.AVESA.00001b.r3.4Ag0001040.4
-	AVESA.00001b.r3.4Ag0001040.1	4388	1092aa	cds.AVESA.00001b.r3.4Ag0001040.1

Gene Model

Click here to download AVESA.00001b.r3.4Ag0001040's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AVESA.00001b.r3.4Ag0001040's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.4Ag0001040

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AVESA.00001b.r3.4Ag0001040

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression