RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	AUR62013483	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	11083 bases	Strand	Plus strand
Position	C_Quinoa_Scaffold_1611 : 3756619 - 3767701	RNA binding domain	KOW , Spt5-NGN , Spt5_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
AUR62013483-RA:cds	KOW	PF00467	1.4e-29	1
AUR62013483-RA:cds	Spt5-NGN	PF03439	3.8e-22	2
AUR62013483-RA:cds	Spt5_N	PF11942	2.7e-11	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	AUR62013483-RA	3336	1014aa	AUR62013483-RA:cds

Gene Model

Click here to download AUR62013483's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AUR62013483's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AUR62013483

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AUR62013483

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression