RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ATMG01250	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	369 bases	Strand	Plus strand
Position	Mt : 310514 - 310882	RNA binding domain	RVT_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ATMG01250	RVT_1	PF00078	7.3e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ATMG01250	369	122aa	ATMG01250

Gene Model

Click here to download ATMG01250's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ATMG01250's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ATMG01250

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ATMG01250	arabidopsis_thaliana	ATMG01250.1	45.9016	33.6066	cannabis_sativa_female	cds.evm.model.02.1550	43.0769	31.5385
ATMG01250	arabidopsis_thaliana	ATMG01250.1	48.3607	31.1475	cannabis_sativa_female	cds.evm.model.05.1649	29.6482	19.0955

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression