RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ATCG00660	Gene ID		Accession	-
Symbol	rpl20	Alias	-	Full Name	NA
Status	Confidence	Length	354 bases	Strand	Minus strand
Position	Pt : 68512 - 68865	RNA binding domain	Ribosomal_L20
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ATCG00660	Ribosomal_L20	PF00453	4.4e-32	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
rpl20-201	ATCG00660	354	117aa	ATCG00660

Gene Model

Click here to download ATCG00660's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ATCG00660's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ATCG00660	arabidopsis_thaliana	AT1G16740.1	43.6508	26.1905	arabidopsis_thaliana	ATCG00660.1	47.0085	28.2051

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ATCG00660	arabidopsis_thaliana	ATCG00660.1	62.3932	41.8803	chondrus_crispus	CCP38156	64.0351	42.9825
ATCG00660	arabidopsis_thaliana	ATCG00660.1	85.4701	74.359	cucumis_melo	MELO3C028023.2.1	78.125	67.9688
ATCG00660	arabidopsis_thaliana	ATCG00660.1	72.6496	62.3932	cucumis_melo	MELO3C028123.2.1	75.2212	64.6018
ATCG00660	arabidopsis_thaliana	ATCG00660.1	91.453	80.3419	cucumis_melo	MELO3C027088.2.1	79.2593	69.6296
ATCG00660	arabidopsis_thaliana	ATCG00660.1	67.5214	59.8291	solanum_lycopersicum	Solyc11g063660.1.1.1	81.4433	72.1649
ATCG00660	arabidopsis_thaliana	ATCG00660.1	74.359	66.6667	solanum_lycopersicum	Solyc11g063440.2.1	77.6786	69.6429
ATCG00660	arabidopsis_thaliana	ATCG00660.1	68.3761	61.5385	solanum_lycopersicum	Solyc11g063720.1.1.1	82.4742	74.2268
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	Vigun05g159400.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	VigunL037400.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	VigunL083300.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	76.9231	60.6838	vigna_unguiculata	Vigun05g158133.1.v1.2.CDS.1	83.3333	65.7407
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	VigunL026700.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	VigunL069000.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	86.3248	70.0855	vigna_unguiculata	VigunL022200.1.v1.2.CDS.1	84.8739	68.9076
ATCG00660	arabidopsis_thaliana	ATCG00660.1	82.0513	68.3761	phaseolus_vulgaris	ESW29689	82.7586	68.9655
ATCG00660	arabidopsis_thaliana	ATCG00660.1	61.5385	51.2821	brachypodium_distachyon	PNT63588	76.5957	63.8298
ATCG00660	arabidopsis_thaliana	ATCG00660.1	55.5556	45.2991	brachypodium_distachyon	PNT73982	75.5814	61.6279
ATCG00660	arabidopsis_thaliana	ATCG00660.1	100	99.1453	arabidopsis_lyrata	scaffold_201016.1	100	99.1453
ATCG00660	arabidopsis_thaliana	ATCG00660.1	100	99.1453	arabidopsis_lyrata	scaffold_201114.1	100	99.1453
ATCG00660	arabidopsis_thaliana	ATCG00660.1	88.8889	77.7778	capsicum_annuum	PHT88753	67.5325	59.0909
ATCG00660	arabidopsis_thaliana	ATCG00660.1	88.8889	77.7778	capsicum_annuum	PHT73081	67.5325	59.0909
ATCG00660	arabidopsis_thaliana	ATCG00660.1	88.8889	77.7778	capsicum_annuum	PHT69683	67.5325	59.0909
ATCG00660	arabidopsis_thaliana	ATCG00660.1	92.3077	77.7778	cajanus_cajan	C.cajan_28958.t.cds1	78.2609	65.942
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	setaria_viridis	TKV90672	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	59.8291	37.6068	cyanidioschyzon_merolae	CMV151CT	60.3448	37.931
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	65.812	aegilops_tauschii	AET4Gv20045800.1	78.9916	64.7059
ATCG00660	arabidopsis_thaliana	ATCG00660.1	73.5043	60.6838	aegilops_tauschii	AET2Gv20612600.1	79.6296	65.7407
ATCG00660	arabidopsis_thaliana	ATCG00660.1	68.3761	56.4103	aegilops_tauschii	AET1Gv20469900.1	77.6699	64.0777
ATCG00660	arabidopsis_thaliana	ATCG00660.1	76.0684	61.5385	aegilops_tauschii	AET2Gv20750000.1	80.1802	64.8649
ATCG00660	arabidopsis_thaliana	ATCG00660.1	54.7009	41.8803	aegilops_tauschii	AET4Gv20085600.1	74.4186	56.9767
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	triticum_urartu	TuG1812G0300001217.01.T01.cds271934	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	92.3077	82.0513	fraxinus_excelsior	FRAEX38873_v2_000199220.1.cds1	84.375	75
ATCG00660	arabidopsis_thaliana	ATCG00660.1	92.3077	82.0513	fraxinus_excelsior	FRAEX38873_v2_000077130.1.cds1	84.375	75
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1520310.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1514230.1.CDS.1	79.8319	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1497760.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	67.5214	56.4103	avena_sativa_sang	AVESA.00010b.r2.5CG0887800.1.CDS.1	80.6122	67.3469
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1483810.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1517180.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1489830.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1508380.1.CDS.1	79.8319	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1496940.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	56.4103	46.1538	avena_sativa_sang	AVESA.00010b.r2.UnG1522500.1.CDS.1	76.7442	62.7907
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1490590.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1508220.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1493660.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	56.4103	46.1538	avena_sativa_sang	AVESA.00010b.r2.UnG1509730.1.CDS.1	76.7442	62.7907
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1479810.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1489740.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1519110.1.CDS.1	78.9916	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	56.4103	46.1538	avena_sativa_sang	AVESA.00010b.r2.UnG1508750.1.CDS.1	76.7442	62.7907
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1487940.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1486300.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1491300.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1510050.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1505630.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1497650.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1467080.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	68.3761	57.265	avena_sativa_sang	AVESA.00010b.r2.UnG1486930.1.CDS.1	77.6699	65.0485
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	avena_sativa_sang	AVESA.00010b.r2.UnG1501970.1.CDS.1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	67.5214	55.5556	avena_sativa_sang	AVESA.00010b.r2.UnG1499640.1.CDS.1	76.699	63.1068
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	avena_sativa_sang	AVESA.00010b.r2.UnG1495520.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_glaberrima	ORGLA11G0191900.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_glaberrima	ORGLA08G0205600.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_glaberrima	ORGLA03G0399300.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_glaberrima	ORGLA06G0239900.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_glaberrima	ORGLA06G0269700.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	76.9231	62.3932	oryza_glaberrima	ORGLA09G0177500.1	75.6302	61.3445
ATCG00660	arabidopsis_thaliana	ATCG00660.1	79.4872	66.6667	triticum_turgidum	TRITD3Bv1G076190.1	78.1513	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	65.812	triticum_turgidum	TRITD1Bv1G012330.2	78.9916	64.7059
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	panicum_hallii	PUZ39576	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	56.4103	46.1538	panicum_hallii	PUZ60632	76.7442	62.7907
ATCG00660	arabidopsis_thaliana	ATCG00660.1	49.5727	29.0598	selaginella_moellendorffii	EFJ18300	51.3274	30.0885
ATCG00660	arabidopsis_thaliana	ATCG00660.1	47.8632	29.9145	selaginella_moellendorffii	EFJ07825	59.5745	37.234
ATCG00660	arabidopsis_thaliana	ATCG00660.1	49.5727	29.0598	selaginella_moellendorffii	EFJ07821	51.3274	30.0885
ATCG00660	arabidopsis_thaliana	ATCG00660.1	48.7179	29.9145	selaginella_moellendorffii	EFJ07295	58.7629	36.0825
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	66.6667	oryza_sativa	cds-CAA33971.1	78.9916	65.5462
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	triticum_aestivum	TraesCSU02G267600.1.cds1	78.9916	66.3866
ATCG00660	arabidopsis_thaliana	ATCG00660.1	75.2137	62.3932	triticum_aestivum	TraesCS2B02G316200.1.cds1	82.243	68.2243
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	67.5214	secale_cereale	SECCE6Rv1G0393790.1.CDS.1	81.0345	68.1034
ATCG00660	arabidopsis_thaliana	ATCG00660.1	80.3419	65.812	secale_cereale	SECCE4Rv1G0240830.1.CDS.1	78.9916	64.7059
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	secale_cereale	SECCE6Rv1G0393800.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	secale_cereale	SECCE6Rv1G0393780.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	secale_cereale	SECCE5Rv1G0317210.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	secale_cereale	SECCEUnv1G0560350.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	79.4872	66.6667	secale_cereale	SECCEUnv1G0560340.1.CDS.1	80.1724	67.2414
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	secale_cereale	SECCEUnv1G0556290.1.CDS.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	75.2137	63.2479	gossypium_raimondii	KJB69853	82.243	69.1589
ATCG00660	arabidopsis_thaliana	ATCG00660.1	83.7607	67.5214	gossypium_raimondii	KJB76562	47.5728	38.3495
ATCG00660	arabidopsis_thaliana	ATCG00660.1	89.7436	74.359	helianthus_annuus	CDS:HanXRQr2_Chr11g0496351.1	78.3582	64.9254
ATCG00660	arabidopsis_thaliana	ATCG00660.1	90.5983	78.6325	helianthus_annuus	CDS:HanXRQr2_Chr11g0499341.1	84.127	73.0159
ATCG00660	arabidopsis_thaliana	ATCG00660.1	91.453	78.6325	helianthus_annuus	CDS:HanXRQr2_Chr01g0023621.1	84.9206	73.0159
ATCG00660	arabidopsis_thaliana	ATCG00660.1	88.0342	75.2137	helianthus_annuus	CDS:HanXRQr2_Chr01g0017651.1	74.1007	63.3094
ATCG00660	arabidopsis_thaliana	ATCG00660.1	91.453	79.4872	helianthus_annuus	CDS:HanXRQr2_Chr04g0139021.1	84.9206	73.8095
ATCG00660	arabidopsis_thaliana	ATCG00660.1	79.4872	65.812	triticum_dicoccoides	TRIDC4AG025890.1	78.1513	64.7059
ATCG00660	arabidopsis_thaliana	ATCG00660.1	81.1966	68.3761	triticum_dicoccoides	TRIDC5AG002220.1	79.8319	67.2269
ATCG00660	arabidopsis_thaliana	ATCG00660.1	67.5214	54.7009	triticum_dicoccoides	TRIDC2BG048340.1	76.699	62.1359
ATCG00660	arabidopsis_thaliana	ATCG00660.1	79.4872	64.9573	triticum_dicoccoides	TRIDC2AG008330.1	78.1513	63.8655
ATCG00660	arabidopsis_thaliana	ATCG00660.1	76.9231	63.2479	triticum_dicoccoides	TRIDC3BG079190.1	75.6302	62.1849
ATCG00660	arabidopsis_thaliana	ATCG00660.1	84.6154	70.0855	kalanchoe_fedtschenkoi	Kaladp0001s0131.1.v1.1.CDS.1	81.8182	67.7686
ATCG00660	arabidopsis_thaliana	ATCG00660.1	90.5983	79.4872	kalanchoe_fedtschenkoi	Kaladp0060s0344.1.v1.1.CDS.1	88.3333	77.5
ATCG00660	arabidopsis_thaliana	ATCG00660.1	96.5812	94.8718	brassica_napus	CDY33709	96.5812	94.8718
ATCG00660	arabidopsis_thaliana	ATCG00660.1	96.5812	94.8718	brassica_napus	CDY46566	96.5812	94.8718
ATCG00660	arabidopsis_thaliana	ATCG00660.1	96.5812	94.8718	brassica_napus	CDY28592	96.5812	94.8718
ATCG00660	arabidopsis_thaliana	ATCG00660.1	91.453	79.4872	daucus_carota	KZM81245	83.5938	72.6562
ATCG00660	arabidopsis_thaliana	ATCG00660.1	94.8718	82.906	rosa_chinensis	PRQ15689	94.8718	82.906
ATCG00660	arabidopsis_thaliana	ATCG00660.1	59.8291	41.0256	nymphaea_colorata	NC1G0064320.1:cds	59.322	40.678
ATCG00660	arabidopsis_thaliana	ATCG00660.1	88.8889	73.5043	cynara_cardunculus	KVH89371	69.3333	57.3333

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression