Description

Ensembl ID AT5G61930 Gene ID 836314 Accession -
Symbol APO3 Alias - Full Name APO RNA-binding protein (DUF794)
Status Confidence Length 3727 bases Strand Minus strand
Position 5 : 24865086 - 24868812 RNA binding domain APO_RNA-bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G61930 APO_RNA-bind PF05634 6.3e-114 1
AT5G61930 APO_RNA-bind PF05634 6.3e-114 2
AT5G61930 APO_RNA-bind PF05634 6.3e-114 3
AT5G61930 APO_RNA-bind PF05634 6.3e-114 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
APO3-202 AT5G61930 2511 402aa AT5G61930

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G61930arabidopsis_thalianaAT3G21740.148.961428.7834arabidopsis_thalianaAT5G61930.141.044824.1294
AT5G61930arabidopsis_thalianaAT5G57930.249.209933.4086arabidopsis_thalianaAT5G61930.154.228936.8159
AT5G61930arabidopsis_thalianaAT1G64810.25032.6087arabidopsis_thalianaAT5G61930.157.213937.3134

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G61930arabidopsis_thalianaAT5G61930.173.631860.199ficus_caricaFCD_00016109-RA:cds71.153858.1731
AT5G61930arabidopsis_thalianaAT5G61930.177.114465.4229theobroma_cacaoEOY2264475.242763.835
AT5G61930arabidopsis_thalianaAT5G61930.172.885659.204beta_vulgarisKMS9692268.139555.3488
AT5G61930arabidopsis_thalianaAT5G61930.172.885659.204cucumis_sativusKGN4964768.298455.4779
AT5G61930arabidopsis_thalianaAT5G61930.174.378162.1891populus_trichocarpaPotri.015G106200.5.v4.171.021459.3824
AT5G61930arabidopsis_thalianaAT5G61930.174.626959.7015lactuca_sativacds-PLY68898.173.529458.8235
AT5G61930arabidopsis_thalianaAT5G61930.151.990140.796eragrostis_curvulaTVU2968547.537.2727
AT5G61930arabidopsis_thalianaAT5G61930.172.636858.7065citrullus_lanatusCla97C06G128150.167.436554.5035
AT5G61930arabidopsis_thalianaAT5G61930.171.890558.4577vigna_radiataVradi0153s00070.167.681555.0351
AT5G61930arabidopsis_thalianaAT5G61930.172.139358.4577vigna_unguiculataVigun08g123400.1.v1.267.75754.9065
AT5G61930arabidopsis_thalianaAT5G61930.148.507541.0448prunus_aviumPav_sc0001040.1_g360.1.mk:mrna67.241456.8966
AT5G61930arabidopsis_thalianaAT5G61930.174.129461.4428prunus_aviumPav_sc0009766.1_g020.1.mk:mrna66.517955.1339
AT5G61930arabidopsis_thalianaAT5G61930.171.144358.4577phaseolus_vulgarisESW3276566.978955.0351
AT5G61930arabidopsis_thalianaAT5G61930.153.233838.5572asparagus_officinalisONK5774752.45137.9902
AT5G61930arabidopsis_thalianaAT5G61930.173.134359.7015pisum_sativumPsat2g055080.1.cds69.014156.338
AT5G61930arabidopsis_thalianaAT5G61930.152.985140.2985brachypodium_distachyonKQJ9991051.201938.9423
AT5G61930arabidopsis_thalianaAT5G61930.112.686611.6915quercus_subercds-POE64403.170.833365.2778
AT5G61930arabidopsis_thalianaAT5G61930.15039.0547quercus_subercds-POE64395.165.472351.1401
AT5G61930arabidopsis_thalianaAT5G61930.126.368222.8856quercus_subercds-POE64394.191.379379.3103
AT5G61930arabidopsis_thalianaAT5G61930.177.860762.9353quercus_subercds-POE64407.149.603840.0951
AT5G61930arabidopsis_thalianaAT5G61930.114.179112.1891quercus_subercds-POE64396.161.290352.6882
AT5G61930arabidopsis_thalianaAT5G61930.114.427912.4378quercus_subercds-POE64392.162.365653.7634
AT5G61930arabidopsis_thalianaAT5G61930.124.875618.1592quercus_subercds-POF06286.166.225248.3444
AT5G61930arabidopsis_thalianaAT5G61930.176.865762.1891quercus_subercds-POE64399.172.705958.8235
AT5G61930arabidopsis_thalianaAT5G61930.152.985140.5473ananas_comosusAco003367.1.mrna146.506535.5895
AT5G61930arabidopsis_thalianaAT5G61930.193.532390.5473arabidopsis_lyratafgenesh2_kg.8__2180__AT5G61930.29491
AT5G61930arabidopsis_thalianaAT5G61930.176.616961.9403quercus_lobataQL05p083180:mrna72.470658.5882
AT5G61930arabidopsis_thalianaAT5G61930.170.39858.4577lupinus_angustifoliusOIW1649166.431955.1643
AT5G61930arabidopsis_thalianaAT5G61930.184.328478.607eutrema_salsugineumESQ3173784.119178.4119
AT5G61930arabidopsis_thalianaAT5G61930.189.552286.8159arabidopsis_hallerig12185.t189.3386.6005
AT5G61930arabidopsis_thalianaAT5G61930.172.139358.7065cajanus_cajanC.cajan_05377.t67.915755.2693
AT5G61930arabidopsis_thalianaAT5G61930.152.238840.5473setaria_viridisTKW3978148.498837.6443
AT5G61930arabidopsis_thalianaAT5G61930.150.99540.0498oryza_nivaraONIVA07G19850.149.278838.7019
AT5G61930arabidopsis_thalianaAT5G61930.150.99540.0498oryza_glumipatulaOGLUM07G21040.149.278838.7019
AT5G61930arabidopsis_thalianaAT5G61930.151.492541.0448zea_maysZm00001eb244100_P00148.364538.5514
AT5G61930arabidopsis_thalianaAT5G61930.152.736340.2985lolium_perennecds.KYUSt_chr2.3426850.961538.9423
AT5G61930arabidopsis_thalianaAT5G61930.186.318479.8507arabis_alpinaKFK2793585.891179.4554
AT5G61930arabidopsis_thalianaAT5G61930.111.1945.22388ciona_savignyiENSCSAVP0000001440639.82318.5841
AT5G61930arabidopsis_thalianaAT5G61930.184.825978.8557brassica_junceacds.BjuB07g34590S83.374177.5061
AT5G61930arabidopsis_thalianaAT5G61930.185.323480.8458brassica_junceacds.BjuA09g64690S85.964981.4536
AT5G61930arabidopsis_thalianaAT5G61930.120.646817.1642brassica_junceacds.BjuB06g48220S78.301965.0943
AT5G61930arabidopsis_thalianaAT5G61930.135.323429.1045oryza_brachyanthaOB02G28250.147.176138.8704
AT5G61930arabidopsis_thalianaAT5G61930.161.940348.0099glycine_maxKRH1708962.2548.25
AT5G61930arabidopsis_thalianaAT5G61930.172.636858.7065glycine_maxKRH7273868.384155.2693
AT5G61930arabidopsis_thalianaAT5G61930.175.621961.9403corymbia_citriodoracds-KAF8035067.170.862558.042
AT5G61930arabidopsis_thalianaAT5G61930.153.233841.2935aegilops_tauschiiAET6Gv20638300.333.968326.3492
AT5G61930arabidopsis_thalianaAT5G61930.153.731341.0448triticum_urartuTuG1812G0600002723.01.T0151.306439.1924
AT5G61930arabidopsis_thalianaAT5G61930.129.60220.8955oryza_longistaminataKN538895.1_FGP02140.476228.5714
AT5G61930arabidopsis_thalianaAT5G61930.153.980141.2935avena_sativa_sangAVESA.00010b.r2.6DG1160720.1.CDS51.7939.6181
AT5G61930arabidopsis_thalianaAT5G61930.153.233841.2935avena_sativa_sangAVESA.00010b.r2.6CG1136720.1.CDS50.831439.4299
AT5G61930arabidopsis_thalianaAT5G61930.152.985141.2935avena_sativa_sangAVESA.00010b.r2.6AG1039600.1.CDS51.201939.9038
AT5G61930arabidopsis_thalianaAT5G61930.150.746339.3035musa_acuminataMa08_p29690.149.275438.1642
AT5G61930arabidopsis_thalianaAT5G61930.150.99540.0498oryza_glaberrimaORGLA07G0163300.149.278838.7019
AT5G61930arabidopsis_thalianaAT5G61930.152.736341.2935hordeum_vulgareHORVU.MOREX.r3.6HG0602160.150.356339.4299
AT5G61930arabidopsis_thalianaAT5G61930.152.487641.0448triticum_turgidumTRITD6Bv1G143050.150.118839.1924
AT5G61930arabidopsis_thalianaAT5G61930.153.980141.5423triticum_turgidumTRITD6Av1G156540.250.465138.8372
AT5G61930arabidopsis_thalianaAT5G61930.151.990140.0498panicum_halliiPUZ7612648.717937.5291
AT5G61930arabidopsis_thalianaAT5G61930.114.925411.9403echinochloa_crusgalliscaffold22.41.cds40.268532.2148
AT5G61930arabidopsis_thalianaAT5G61930.151.492540.5473echinochloa_crusgalliscaffold17.628.cds47.695937.5576
AT5G61930arabidopsis_thalianaAT5G61930.151.990140.796echinochloa_crusgalliscaffold5.199.cds48.491938.051
AT5G61930arabidopsis_thalianaAT5G61930.126.865719.403echinochloa_crusgalliscaffold191.109.cds13.33339.62963
AT5G61930arabidopsis_thalianaAT5G61930.122.636815.9204echinochloa_crusgalliscaffold3.356.cds16.914511.8959
AT5G61930arabidopsis_thalianaAT5G61930.115.422912.4378echinochloa_crusgalliscaffold1.343.cds41.333333.3333
AT5G61930arabidopsis_thalianaAT5G61930.151.492540.5473echinochloa_crusgalliscaffold41.37.cds46.412636.5471
AT5G61930arabidopsis_thalianaAT5G61930.172.885661.194actinidia_chinensisPSR9680072.167560.5911
AT5G61930arabidopsis_thalianaAT5G61930.176.865763.1841citrus_clementinaESR5019968.666756.4444
AT5G61930arabidopsis_thalianaAT5G61930.151.492540.5473oryza_indicaBGIOSGA026080-PA49.521538.9952
AT5G61930arabidopsis_thalianaAT5G61930.151.492540.5473oryza_sativaOs07t0600300-0049.521538.9952
AT5G61930arabidopsis_thalianaAT5G61930.111.44284.72637homo_sapiensENSP0000041944940.70816.8142
AT5G61930arabidopsis_thalianaAT5G61930.152.487641.0448triticum_aestivumTraesCS6B02G279000.150.118839.1924
AT5G61930arabidopsis_thalianaAT5G61930.153.980141.5423triticum_aestivumTraesCS6A02G245300.151.543939.6675
AT5G61930arabidopsis_thalianaAT5G61930.154.228941.791triticum_aestivumTraesCS6D02G227700.151.904840
AT5G61930arabidopsis_thalianaAT5G61930.150.99540.0498oryza_rufipogonORUFI07G22190.149.278838.7019
AT5G61930arabidopsis_thalianaAT5G61930.153.482641.2935secale_cerealeSECCE6Rv1G0401240.151.068939.4299
AT5G61930arabidopsis_thalianaAT5G61930.177.114463.9303gossypium_raimondiiKJB5130075.060562.2276
AT5G61930arabidopsis_thalianaAT5G61930.173.631858.4577helianthus_annuusmRNA:HanXRQr2_Chr14g066370173.631858.4577
AT5G61930arabidopsis_thalianaAT5G61930.150.746339.5522oryza_punctataOPUNC07G19730.148.22737.5887
AT5G61930arabidopsis_thalianaAT5G61930.152.238839.801eragrostis_tefEt_1A_004839.CDS48.837237.2093
AT5G61930arabidopsis_thalianaAT5G61930.137.064727.3632eragrostis_tefEt_1B_009640.CDS145.705533.7423
AT5G61930arabidopsis_thalianaAT5G61930.154.477644.5274medicago_truncatulaAES9876449.547540.4977
AT5G61930arabidopsis_thalianaAT5G61930.150.99540.5473sorghum_bicolorEES0698048.463438.5343
AT5G61930arabidopsis_thalianaAT5G61930.152.985141.0448triticum_dicoccoidesTRIDC6AG037890.146.103935.7143
AT5G61930arabidopsis_thalianaAT5G61930.152.487641.0448triticum_dicoccoidesTRIDC6BG044850.250.118839.1924
AT5G61930arabidopsis_thalianaAT5G61930.173.383161.6915manihot_esculentaOAY3216570.574259.3301
AT5G61930arabidopsis_thalianaAT5G61930.171.39356.7164kalanchoe_fedtschenkoiKaladp0081s0376.1.v1.166.281852.6559
AT5G61930arabidopsis_thalianaAT5G61930.173.880660.199trifolium_pratenseTp57577_TGAC_v2_mRNA3592465.562953.4216
AT5G61930arabidopsis_thalianaAT5G61930.185.323480.597brassica_rapa_ro18A09p008150.1_BraROA.185.964981.203
AT5G61930arabidopsis_thalianaAT5G61930.121.641816.9154eucalyptus_grandisKCW7659562.589948.9209
AT5G61930arabidopsis_thalianaAT5G61930.150.99541.0448dioscorea_rotundataDRNTG_33014.151.507541.4573
AT5G61930arabidopsis_thalianaAT5G61930.174.129461.9403prunus_persicaONI2880866.517955.5804
AT5G61930arabidopsis_thalianaAT5G61930.152.985141.2935avena_sativa_ot3098cds.AVESA.00001b.r3.6Cg0000631.238.447729.9639
AT5G61930arabidopsis_thalianaAT5G61930.154.228941.5423avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0001323.152.028639.8568
AT5G61930arabidopsis_thalianaAT5G61930.152.985141.2935avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0001644.151.201939.9038
AT5G61930arabidopsis_thalianaAT5G61930.174.626960.6965chenopodium_quinoaAUR62009536-RA:cds58.593847.6562
AT5G61930arabidopsis_thalianaAT5G61930.173.631860.6965chenopodium_quinoaAUR62041700-RA:cds68.677556.6125
AT5G61930arabidopsis_thalianaAT5G61930.152.736340.2985digitaria_exilisDexi1A01G0017250.1:cds49.074137.5
AT5G61930arabidopsis_thalianaAT5G61930.152.238840.796digitaria_exilisDexi1B01G0016100.1:cds48.723938.051
AT5G61930arabidopsis_thalianaAT5G61930.140.79631.3433oryza_barthiiOBART07G21180.146.991436.1032
AT5G61930arabidopsis_thalianaAT5G61930.148.756245.0249brassica_oleraceaBo3g108200.187.892481.1659
AT5G61930arabidopsis_thalianaAT5G61930.185.572180.0995brassica_oleraceaBo9g014760.184.729179.3103
AT5G61930arabidopsis_thalianaAT5G61930.119.651716.1692prunus_dulcisVVA3584478.217864.3564
AT5G61930arabidopsis_thalianaAT5G61930.174.129461.6915prunus_dulcisVVA3405366.517955.3571
AT5G61930arabidopsis_thalianaAT5G61930.174.875661.6915corylus_avellanaCav03g00280.t171.158458.6288
AT5G61930arabidopsis_thalianaAT5G61930.129.60221.8905leersia_perrieriLPERR07G11350.145.247133.4601
AT5G61930arabidopsis_thalianaAT5G61930.150.497538.3085leersia_perrieriLPERR02G16650.147.54136.0656
AT5G61930arabidopsis_thalianaAT5G61930.175.621960.4478pistacia_veracds-EVM0017162.171.361557.0423
AT5G61930arabidopsis_thalianaAT5G61930.175.621960.4478pistacia_veracds-EVM0022045.171.361557.0423
AT5G61930arabidopsis_thalianaAT5G61930.111.1944.72637drosophila_melanogasterFBpp007290840.909117.2727
AT5G61930arabidopsis_thalianaAT5G61930.145.024941.791brassica_napusCDX8694886.602980.3828
AT5G61930arabidopsis_thalianaAT5G61930.185.323480.0995brassica_napusCDY1679983.050877.9661
AT5G61930arabidopsis_thalianaAT5G61930.185.323479.1045brassica_napusCDX8722884.482878.3251
AT5G61930arabidopsis_thalianaAT5G61930.151.243839.5522oryza_meridionalisOMERI07G17920.143.368433.4737
AT5G61930arabidopsis_thalianaAT5G61930.188.557284.5771camelina_sativaCsa02g069950.188.778184.788
AT5G61930arabidopsis_thalianaAT5G61930.189.303586.0696camelina_sativaCsa18g035330.188.861485.6436
AT5G61930arabidopsis_thalianaAT5G61930.180.348377.3632camelina_sativaCsa11g098750.195.562192.0118
AT5G61930arabidopsis_thalianaAT5G61930.156.965244.7761malus_domestica_goldenmRNA:MD07G006530065.994251.8732
AT5G61930arabidopsis_thalianaAT5G61930.175.621962.4378malus_domestica_goldenmRNA:MD07G006500065.517254.0948
AT5G61930arabidopsis_thalianaAT5G61930.166.417954.7264daucus_carotaKZM8857375.211361.9718
AT5G61930arabidopsis_thalianaAT5G61930.175.373161.194juglans_regiacds.Jr09_03580_p171.971558.4323
AT5G61930arabidopsis_thalianaAT5G61930.154.477641.5423nymphaea_colorataNC3G0204660.1:cds68.224352.0249
AT5G61930arabidopsis_thalianaAT5G61930.172.885657.4627nymphaea_colorataNC1G0181050.1:cds49.57739.0863
AT5G61930arabidopsis_thalianaAT5G61930.172.388158.4577vigna_angularisKOM4735668.149955.0351
AT5G61930arabidopsis_thalianaAT5G61930.152.487640.5473setaria_italicaKQL3005048.729837.6443
AT5G61930arabidopsis_thalianaAT5G61930.175.870663.6816vitis_viniferaVitvi17g00702_P00172.966561.244
AT5G61930arabidopsis_thalianaAT5G61930.167.412954.4776cynara_cardunculusKVH9176176.553761.8644

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0008150involved_in biological_process1NDArabidopsis_thaliana(3702)Process

Expression