Description

Ensembl ID AT5G57930 Gene ID 835904 Accession -
Symbol APO2 Alias - Full Name APO RNA-binding protein (DUF794)
Status Confidence Length 1935 bases Strand Plus strand
Position 5 : 23454592 - 23456526 RNA binding domain APO_RNA-bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G57930 APO_RNA-bind PF05634 3.4e-125 1
AT5G57930 APO_RNA-bind PF05634 3.4e-125 2
AT5G57930 APO_RNA-bind PF05634 3.5e-125 3
AT5G57930 APO_RNA-bind PF05634 3.5e-125 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
APO2-201 AT5G57930 1602 443aa AT5G57930

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G57930arabidopsis_thalianaAT1G64810.253.478337.8261arabidopsis_thalianaAT5G57930.255.530539.2777
AT5G57930arabidopsis_thalianaAT5G61930.154.228936.8159arabidopsis_thalianaAT5G57930.249.209933.4086
AT5G57930arabidopsis_thalianaAT3G21740.150.741835.3116arabidopsis_thalianaAT5G57930.238.600526.8623

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G57930arabidopsis_thalianaAT5G57930.257.336339.9549marchantia_polymorphaPTQ4593853.699837.4207
AT5G57930arabidopsis_thalianaAT5G57930.273.814957.7878papaver_somniferumRZC7357870.626455.2916
AT5G57930arabidopsis_thalianaAT5G57930.274.040657.5621papaver_somniferumRZC6979170.842355.0756
AT5G57930arabidopsis_thalianaAT5G57930.279.006863.8826cannabis_sativa_femalecds.evm.model.08.35464.935152.5046
AT5G57930arabidopsis_thalianaAT5G57930.279.006863.6569ficus_caricaFCD_00029031-RA:cds78.299863.0872
AT5G57930arabidopsis_thalianaAT5G57930.278.555365.9142theobroma_cacaoEOY2952976.65264.3172
AT5G57930arabidopsis_thalianaAT5G57930.278.555364.3341beta_vulgarisKMT090177561.4224
AT5G57930arabidopsis_thalianaAT5G57930.279.006862.9797cucumis_meloMELO3C010216.2.177.605361.8625
AT5G57930arabidopsis_thalianaAT5G57930.279.232563.2054cucumis_sativusKGN6516577.82762.0843
AT5G57930arabidopsis_thalianaAT5G57930.278.329665.237populus_trichocarpaPotri.006G183900.1.v4.176.263763.5165
AT5G57930arabidopsis_thalianaAT5G57930.278.103863.4312populus_trichocarpaPotri.018G106400.1.v4.176.04461.7582
AT5G57930arabidopsis_thalianaAT5G57930.276.29864.1084solanum_lycopersicumSolyc07g005570.3.177.522965.1376
AT5G57930arabidopsis_thalianaAT5G57930.275.620862.754lactuca_sativacds-PLY94915.172.984760.5664
AT5G57930arabidopsis_thalianaAT5G57930.273.137758.0135eragrostis_curvulaTVU2839372.160457.2383
AT5G57930arabidopsis_thalianaAT5G57930.279.006863.8826citrullus_lanatusCla97C06G121680.168.093455.0584
AT5G57930arabidopsis_thalianaAT5G57930.275.39563.8826vigna_radiataVradi07g06040.176.605564.9083
AT5G57930arabidopsis_thalianaAT5G57930.271.783357.1106amborella_trichopodaERN0703864.50351.3185
AT5G57930arabidopsis_thalianaAT5G57930.275.39563.6569vigna_unguiculataVigun03g209000.1.v1.276.605564.6789
AT5G57930arabidopsis_thalianaAT5G57930.271.106159.3679prunus_aviumPav_sc0000557.1_g900.1.mk:mrna87.016672.6519
AT5G57930arabidopsis_thalianaAT5G57930.275.846563.2054phaseolus_vulgarisESW2559976.537663.7813
AT5G57930arabidopsis_thalianaAT5G57930.271.331856.8849asparagus_officinalisONK7244669.146655.1422
AT5G57930arabidopsis_thalianaAT5G57930.276.975263.2054pisum_sativumPsat5g263840.1.cds72.399159.448
AT5G57930arabidopsis_thalianaAT5G57930.271.331856.6591brachypodium_distachyonKQK0158869.450555.1648
AT5G57930arabidopsis_thalianaAT5G57930.278.78165.6885quercus_subercds-POE94016.167.244756.0694
AT5G57930arabidopsis_thalianaAT5G57930.272.00960.0451ananas_comosusAco021912.1.mrna180.964567.5127
AT5G57930arabidopsis_thalianaAT5G57930.296.162595.0339arabidopsis_lyrataAl_scaffold_0008_225898.156797.0046
AT5G57930arabidopsis_thalianaAT5G57930.278.103865.4628quercus_lobataQL02p093345:mrna76.888964.4444
AT5G57930arabidopsis_thalianaAT5G57930.276.523765.9142capsicum_annuumPHT7533577.752366.9725
AT5G57930arabidopsis_thalianaAT5G57930.276.29864.3341lupinus_angustifoliusOIV9724276.64464.6258
AT5G57930arabidopsis_thalianaAT5G57930.294.582490.5192eutrema_salsugineumESQ4260493.946289.9103
AT5G57930arabidopsis_thalianaAT5G57930.297.742796.614arabidopsis_hallerig16886.t170.636269.8206
AT5G57930arabidopsis_thalianaAT5G57930.272.234861.1738cajanus_cajanC.cajan_22179.t86.021572.8495
AT5G57930arabidopsis_thalianaAT5G57930.275.846564.3341solanum_tuberosumPGSC0003DMT40002906077.064265.367
AT5G57930arabidopsis_thalianaAT5G57930.273.363458.0135setaria_viridisTKW4143973.529458.1448
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_nivaraONIVA02G34570.171.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.276.975264.7856ipomoea_trilobaitb07g01690.t178.571466.129
AT5G57930arabidopsis_thalianaAT5G57930.272.686256.8849oryza_glumipatulaOGLUM02G32090.171.714956.1247
AT5G57930arabidopsis_thalianaAT5G57930.274.266458.2393zea_maysZm00001eb190190_P00174.434458.371
AT5G57930arabidopsis_thalianaAT5G57930.275.169362.0767sesamum_indicumSIN_1006117.t76.201462.9291
AT5G57930arabidopsis_thalianaAT5G57930.275.39562.3025sesamum_indicumSIN_1012279.t76.430263.1579
AT5G57930arabidopsis_thalianaAT5G57930.272.460556.6591lolium_perennecds.KYUSt_chr6.942872.134856.4045
AT5G57930arabidopsis_thalianaAT5G57930.293.002388.939arabis_alpinaKFK2732964.174561.3707
AT5G57930arabidopsis_thalianaAT5G57930.27.900684.06321ciona_savignyiENSCSAVP0000001440630.973515.9292
AT5G57930arabidopsis_thalianaAT5G57930.292.325188.0361brassica_junceacds.BjuA02g32160S92.117187.8378
AT5G57930arabidopsis_thalianaAT5G57930.272.91256.2077oryza_brachyanthaOB02G38470.171.937655.4566
AT5G57930arabidopsis_thalianaAT5G57930.249.435739.9549glycine_maxKRH5494371.335557.6547
AT5G57930arabidopsis_thalianaAT5G57930.275.169363.2054glycine_maxKRH3774476.027463.9269
AT5G57930arabidopsis_thalianaAT5G57930.277.652466.5914corymbia_citriodoracds-KAF8035616.174.458963.8528
AT5G57930arabidopsis_thalianaAT5G57930.270.880455.3047aegilops_tauschiiAET6Gv20738900.376.39959.6107
AT5G57930arabidopsis_thalianaAT5G57930.272.234855.9819triticum_urartuTuG1812G0600003231.01.T0271.910155.7303
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.7878oryza_longistaminataKN538872.1_FGP02872.91257.7878
AT5G57930arabidopsis_thalianaAT5G57930.276.523762.754fraxinus_excelsiorFRAEX38873_v2_000242240.1.cds77.574463.6156
AT5G57930arabidopsis_thalianaAT5G57930.272.234856.2077avena_sativa_sangAVESA.00010b.r2.6AG1026460.1.CDS70.953455.2106
AT5G57930arabidopsis_thalianaAT5G57930.271.106154.6275avena_sativa_sangAVESA.00010b.r2.6CG1089700.1.CDS70.312554.0179
AT5G57930arabidopsis_thalianaAT5G57930.272.460555.9819avena_sativa_sangAVESA.00010b.r2.6DG1173240.1.CDS71.017754.8673
AT5G57930arabidopsis_thalianaAT5G57930.271.331856.8849musa_acuminataMa07_p28690.176.513361.0169
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_glaberrimaORGLA02G0269300.171.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.271.783355.9819hordeum_vulgareHORVU.MOREX.r3.6HG0612770.173.103457.0115
AT5G57930arabidopsis_thalianaAT5G57930.271.331855.7562triticum_turgidumTRITD6Bv1G173640.372.146156.3927
AT5G57930arabidopsis_thalianaAT5G57930.267.268652.3702triticum_turgidumTRITD6Av1G183820.171.462855.6355
AT5G57930arabidopsis_thalianaAT5G57930.271.783355.7562panicum_halliiPUZ7756778.908261.2903
AT5G57930arabidopsis_thalianaAT5G57930.272.234856.4334echinochloa_crusgalliscaffold118.112.cds72.398256.5611
AT5G57930arabidopsis_thalianaAT5G57930.272.686256.8849echinochloa_crusgalliscaffold83.79.cds72.850757.0136
AT5G57930arabidopsis_thalianaAT5G57930.273.137756.8849echinochloa_crusgalliscaffold2.1217.cds73.303257.0136
AT5G57930arabidopsis_thalianaAT5G57930.278.555366.3657citrus_clementinaESR668438067.5862
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_indicaBGIOSGA008992-PA71.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.245.146731.6027selaginella_moellendorffiiEFJ3096557.803540.4624
AT5G57930arabidopsis_thalianaAT5G57930.246.726932.2799selaginella_moellendorffiiEFJ3475557.024839.3939
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_sativaOs02t0732900-0171.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.27.900683.83747homo_sapiensENSP0000041944930.973515.0442
AT5G57930arabidopsis_thalianaAT5G57930.271.783355.7562triticum_aestivumTraesCS6D02G275700.171.460755.5056
AT5G57930arabidopsis_thalianaAT5G57930.271.557655.5305triticum_aestivumTraesCS6B02G325200.271.882155.7823
AT5G57930arabidopsis_thalianaAT5G57930.272.234855.9819triticum_aestivumTraesCS6A02G295100.271.910155.7303
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_rufipogonORUFI02G33120.171.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.271.783356.4334secale_cerealeSECCE6Rv1G0406340.172.108856.6893
AT5G57930arabidopsis_thalianaAT5G57930.271.783356.4334secale_cerealeSECCE6Rv1G0406720.172.108856.6893
AT5G57930arabidopsis_thalianaAT5G57930.279.458267.0429gossypium_raimondiiKJB2734377.876165.708
AT5G57930arabidopsis_thalianaAT5G57930.275.169362.5282helianthus_annuusmRNA:HanXRQr2_Chr15g072149178.537765.3302
AT5G57930arabidopsis_thalianaAT5G57930.272.686258.0135oryza_punctataOPUNC02G29140.171.714957.2383
AT5G57930arabidopsis_thalianaAT5G57930.272.91258.465eragrostis_tefEt_1B_012918.CDS71.937657.6837
AT5G57930arabidopsis_thalianaAT5G57930.272.460557.5621eragrostis_tefEt_1A_008108.CDS71.492256.7929
AT5G57930arabidopsis_thalianaAT5G57930.274.943660.9481medicago_truncatulaAES6724274.272960.4027
AT5G57930arabidopsis_thalianaAT5G57930.265.688554.1761medicago_truncatulaKEH3830588.449872.9483
AT5G57930arabidopsis_thalianaAT5G57930.267.494453.7246saccharum_spontaneumSspon.04G0004180-1P-mRNA-1:cds74.193659.0571
AT5G57930arabidopsis_thalianaAT5G57930.267.945853.7246saccharum_spontaneumSspon.04G0004180-2D-mRNA-1:cds58.904146.5753
AT5G57930arabidopsis_thalianaAT5G57930.273.363457.5621sorghum_bicolorOQU8545773.529457.6923
AT5G57930arabidopsis_thalianaAT5G57930.272.234855.9819triticum_dicoccoidesTRIDC6AG044860.171.910155.7303
AT5G57930arabidopsis_thalianaAT5G57930.272.00955.5305triticum_dicoccoidesTRIDC6BG052520.267.728252.2293
AT5G57930arabidopsis_thalianaAT5G57930.276.29864.5598coffea_canephoraCDP1024477.16965.2968
AT5G57930arabidopsis_thalianaAT5G57930.278.329666.5914manihot_esculentaOAY4145379.223767.3516
AT5G57930arabidopsis_thalianaAT5G57930.274.943660.9481kalanchoe_fedtschenkoiKaladp0101s0165.1.v1.170.638357.4468
AT5G57930arabidopsis_thalianaAT5G57930.225.733618.7359trifolium_pratenseTp57577_TGAC_v2_mRNA2793557.86842.132
AT5G57930arabidopsis_thalianaAT5G57930.239.051933.1828trifolium_pratenseTp57577_TGAC_v2_mRNA2291187.373774.2424
AT5G57930arabidopsis_thalianaAT5G57930.291.873687.3589brassica_rapa_ro18A02p013640.1_BraROA.192.081587.5566
AT5G57930arabidopsis_thalianaAT5G57930.277.200966.14eucalyptus_grandisKCW8116374.02663.4199
AT5G57930arabidopsis_thalianaAT5G57930.276.975266.14eucalyptus_grandisKCW8111973.809563.4199
AT5G57930arabidopsis_thalianaAT5G57930.275.620860.2709dioscorea_rotundataDRNTG_03392.175.280960
AT5G57930arabidopsis_thalianaAT5G57930.279.458265.9142prunus_persicaONH9872178.396465.0334
AT5G57930arabidopsis_thalianaAT5G57930.272.460555.9819avena_sativa_ot3098cds.AVESA.00001b.r3.6Dg0000615.265.644250.7157
AT5G57930arabidopsis_thalianaAT5G57930.272.460556.4334avena_sativa_ot3098cds.AVESA.00001b.r3.6Ag0000919.365.778751.2295
AT5G57930arabidopsis_thalianaAT5G57930.277.200963.8826chenopodium_quinoaAUR62016602-RA:cds73.866161.1231
AT5G57930arabidopsis_thalianaAT5G57930.272.00960.2709chenopodium_quinoaAUR62011455-RA:cds75.77263.4204
AT5G57930arabidopsis_thalianaAT5G57930.254.401843.1151digitaria_exilisDexi1A01G0026560.1:cds71.513456.6766
AT5G57930arabidopsis_thalianaAT5G57930.254.627543.5666digitaria_exilisDexi1B01G0025360.1:cds53.421642.6049
AT5G57930arabidopsis_thalianaAT5G57930.272.91257.1106oryza_barthiiOBART02G31420.171.937656.3474
AT5G57930arabidopsis_thalianaAT5G57930.291.647987.1332brassica_oleraceaBo2g028970.192.063587.5283
AT5G57930arabidopsis_thalianaAT5G57930.279.006865.9142prunus_dulcisVVA2228277.95165.0334
AT5G57930arabidopsis_thalianaAT5G57930.278.555365.237corylus_avellanaCav06g18830.t151.251842.5626
AT5G57930arabidopsis_thalianaAT5G57930.272.460557.1106leersia_perrieriLPERR02G25720.172.789157.3696
AT5G57930arabidopsis_thalianaAT5G57930.276.523765.6885nicotiana_attenuataOIS9723177.752366.7431
AT5G57930arabidopsis_thalianaAT5G57930.276.749461.851olea_europaeaOE9A010919C477.803262.7002
AT5G57930arabidopsis_thalianaAT5G57930.276.975265.9142pistacia_veracds-EVM0019386.180.424568.8679
AT5G57930arabidopsis_thalianaAT5G57930.28.352143.16027drosophila_melanogasterFBpp007290833.636412.7273
AT5G57930arabidopsis_thalianaAT5G57930.292.325188.0361brassica_napusCDY3273892.117187.8378
AT5G57930arabidopsis_thalianaAT5G57930.291.647987.1332brassica_napusCDY0277992.063587.5283
AT5G57930arabidopsis_thalianaAT5G57930.279.68466.3657corchorus_capsularisOMO6173177.753364.7577
AT5G57930arabidopsis_thalianaAT5G57930.273.363457.7878oryza_meridionalisOMERI02G30210.172.383157.0156
AT5G57930arabidopsis_thalianaAT5G57930.295.259693.228camelina_sativaCsa02g062480.195.04593.018
AT5G57930arabidopsis_thalianaAT5G57930.295.033993.0023camelina_sativaCsa11g091540.189.194987.2881
AT5G57930arabidopsis_thalianaAT5G57930.295.711194.3567camelina_sativaCsa18g031040.195.495594.1441
AT5G57930arabidopsis_thalianaAT5G57930.254.176145.8239malus_domestica_goldenmRNA:MD15G012770086.021572.7599
AT5G57930arabidopsis_thalianaAT5G57930.279.006865.0113malus_domestica_goldenmRNA:MD02G000640077.262763.5762
AT5G57930arabidopsis_thalianaAT5G57930.277.426662.754malus_domestica_goldenmRNA:MD15G013400062.820550.9158
AT5G57930arabidopsis_thalianaAT5G57930.272.234860.7223daucus_carotaKZM9615680.200567.4185
AT5G57930arabidopsis_thalianaAT5G57930.276.975265.237rosa_chinensisPRQ2642281.578969.1388
AT5G57930arabidopsis_thalianaAT5G57930.279.458265.0113juglans_regiacds.Jr15_12500_p177.53363.4361
AT5G57930arabidopsis_thalianaAT5G57930.273.363457.5621nymphaea_colorataNC13G0029610.1:cds75.231559.0278
AT5G57930arabidopsis_thalianaAT5G57930.275.39564.1084vigna_angularisKOM3142576.605565.1376
AT5G57930arabidopsis_thalianaAT5G57930.273.363457.7878setaria_italicaKQL3138873.529457.9186
AT5G57930arabidopsis_thalianaAT5G57930.258.916543.1151physcomitrium_patensPp3c1_33440V3.151.076337.3777
AT5G57930arabidopsis_thalianaAT5G57930.278.555363.6569vitis_viniferaVitvi11g00707_P00172.803358.9958
AT5G57930arabidopsis_thalianaAT5G57930.230.022625.7336vitis_viniferaVitvi11g04175_P00181.097669.5122
AT5G57930arabidopsis_thalianaAT5G57930.275.620862.3025cynara_cardunculusKVI0694066.733154.9801

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0009507located_in chloroplast1ISMArabidopsis_thaliana(3702)Component
GO:0009793acts_upstream_of_or_within embryo development ending in seed dormancy1NASArabidopsis_thaliana(3702)Process

Expression