Description

Ensembl ID AT5G57160 Gene ID 835822 Accession -
Symbol ATLIG4 Alias - Full Name DNA ligase IV
Status Confidence Length 6862 bases Strand Minus strand
Position 5 : 23154965 - 23161826 RNA binding domain RNA_ligase
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G57160 RNA_ligase PF09414 3e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
ATLIG4-201 AT5G57160 3983 1219aa AT5G57160

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G57160arabidopsis_thalianaAT1G49250.139.573820.8524arabidopsis_thalianaAT5G57160.121.32911.2387
AT5G57160arabidopsis_thalianaAT1G08130.133.417718.3544arabidopsis_thalianaAT5G57160.121.657111.895
AT5G57160arabidopsis_thalianaAT1G66730.118.5539.74212arabidopsis_thalianaAT5G57160.121.246911.1567

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G57160arabidopsis_thalianaAT5G57160.125.266613.2896chondrus_crispusCDF3375228.465814.9723
AT5G57160arabidopsis_thalianaAT5G57160.130.434818.95chlamydomonas_reinhardtiiPNW7736716.681710.3867
AT5G57160arabidopsis_thalianaAT5G57160.129.778515.9967chlamydomonas_reinhardtiiPNW8218812.54756.74041
AT5G57160arabidopsis_thalianaAT5G57160.158.162441.0993marchantia_polymorphaPTQ5008660.033942.4217
AT5G57160arabidopsis_thalianaAT5G57160.172.928658.0804papaver_somniferumRZC7074272.100657.4209
AT5G57160arabidopsis_thalianaAT5G57160.171.944257.7523papaver_somniferumRZC5674469.273355.6082
AT5G57160arabidopsis_thalianaAT5G57160.171.123957.7523cannabis_sativa_femalecds.evm.model.08.123070.775557.4694
AT5G57160arabidopsis_thalianaAT5G57160.159.55747.2518ficus_caricaFCD_00032459-RA:cds71.106856.4153
AT5G57160arabidopsis_thalianaAT5G57160.167.268255.6194ficus_caricaFCD_00032471-RA:cds76.995363.662
AT5G57160arabidopsis_thalianaAT5G57160.173.666960.0492theobroma_cacaoEOY3204875.146461.2552
AT5G57160arabidopsis_thalianaAT5G57160.168.744954.6349beta_vulgarisKMT1457870.420255.9664
AT5G57160arabidopsis_thalianaAT5G57160.146.841735.0287cucumis_meloMELO3C003972.2.165.257148.8
AT5G57160arabidopsis_thalianaAT5G57160.171.944257.6702cucumis_sativusKGN6117872.240557.9077
AT5G57160arabidopsis_thalianaAT5G57160.173.584960.7055populus_trichocarpaPotri.018G141900.1.v4.168.006156.1031
AT5G57160arabidopsis_thalianaAT5G57160.171.45257.5062solanum_lycopersicumSolyc07g018000.3.174.190859.7104
AT5G57160arabidopsis_thalianaAT5G57160.118.86799.7621caenorhabditis_elegansC07H6.1.131.039116.0594
AT5G57160arabidopsis_thalianaAT5G57160.164.31552.0919lactuca_sativacds-PLY96173.174.524760.3612
AT5G57160arabidopsis_thalianaAT5G57160.139.048423.9541ostreococcus_lucimarinusABO9860247.887329.3763
AT5G57160arabidopsis_thalianaAT5G57160.167.022151.4356eragrostis_curvulaTVU1584464.99649.8807
AT5G57160arabidopsis_thalianaAT5G57160.173.092758.4085citrullus_lanatusCla97C11G217720.172.380257.8392
AT5G57160arabidopsis_thalianaAT5G57160.163.494751.1075vigna_radiataVradi05g02670.170.045256.3801
AT5G57160arabidopsis_thalianaAT5G57160.163.658749.959amborella_trichopodaERN1245569.285754.375
AT5G57160arabidopsis_thalianaAT5G57160.124.282221.6571vigna_unguiculataVigun09g030100.1.v1.289.69780
AT5G57160arabidopsis_thalianaAT5G57160.145.611234.2904vigna_unguiculataVigun09g030200.1.v1.267.149850.4831
AT5G57160arabidopsis_thalianaAT5G57160.166.77654.9631prunus_aviumPav_sc0000624.1_g1370.1.mk:mrna74.405961.2431
AT5G57160arabidopsis_thalianaAT5G57160.169.975456.6858phaseolus_vulgarisESW1076472.781658.959
AT5G57160arabidopsis_thalianaAT5G57160.159.885247.58asparagus_officinalisONK7887571.850457.0866
AT5G57160arabidopsis_thalianaAT5G57160.126.08722.4774pisum_sativumPsat1g144440.1.cds90.08577.6204
AT5G57160arabidopsis_thalianaAT5G57160.142.083731.9114pisum_sativumPsat1g144400.1.cds65.938350
AT5G57160arabidopsis_thalianaAT5G57160.110.91068.36751pisum_sativumPsat5g051520.1.cds171.891955.1351
AT5G57160arabidopsis_thalianaAT5G57160.169.729353.8146brachypodium_distachyonKQJ8444668.770253.0744
AT5G57160arabidopsis_thalianaAT5G57160.171.3758.4085quercus_subercds-POF07460.175.064761.4323
AT5G57160arabidopsis_thalianaAT5G57160.196.964794.8318arabidopsis_lyratafgenesh2_kg.8__1628__AT5G57160.196.805994.6765
AT5G57160arabidopsis_thalianaAT5G57160.18.859727.71124capsicum_annuumPHT645357262.6667
AT5G57160arabidopsis_thalianaAT5G57160.143.232232.0755capsicum_annuumPHT6453670.643452.4129
AT5G57160arabidopsis_thalianaAT5G57160.165.709652.9122lupinus_angustifoliusOIV9740671.073657.2316
AT5G57160arabidopsis_thalianaAT5G57160.192.78188.5972eutrema_salsugineumESQ4268992.704988.5246
AT5G57160arabidopsis_thalianaAT5G57160.194.011591.6325arabidopsis_hallerig24150.t193.170790.813
AT5G57160arabidopsis_thalianaAT5G57160.169.07356.5217cajanus_cajanC.cajan_32229.t77.389763.3272
AT5G57160arabidopsis_thalianaAT5G57160.130.106620.2625setaria_viridisTKW0640454.694536.8107
AT5G57160arabidopsis_thalianaAT5G57160.165.545549.3027oryza_nivaraONIVA04G23690.561.98646.6253
AT5G57160arabidopsis_thalianaAT5G57160.170.549657.26ipomoea_trilobaitb12g00100.t172.329758.7048
AT5G57160arabidopsis_thalianaAT5G57160.166.529950.041oryza_glumipatulaOGLUM04G24450.262.336746.887
AT5G57160arabidopsis_thalianaAT5G57160.168.744952.5841zea_maysZm00001eb071490_P00169.370953.0629
AT5G57160arabidopsis_thalianaAT5G57160.171.205957.3421sesamum_indicumSIN_1003515.t66.007653.1559
AT5G57160arabidopsis_thalianaAT5G57160.111.23877.54717chara_brauniiGBG9011151.310934.4569
AT5G57160arabidopsis_thalianaAT5G57160.188.925384.3314arabis_alpinaKFK2727189.883985.2405
AT5G57160arabidopsis_thalianaAT5G57160.128.137817.9655ciona_savignyiENSCSAVP0000001754444.545528.4416
AT5G57160arabidopsis_thalianaAT5G57160.189.745784.4955brassica_junceacds.BjuA10g12680S89.893284.6343
AT5G57160arabidopsis_thalianaAT5G57160.188.433183.265brassica_junceacds.BjuB02g30290S90.058584.7953
AT5G57160arabidopsis_thalianaAT5G57160.142.083730.4348oryza_brachyanthaOB04G31400.156.188440.6353
AT5G57160arabidopsis_thalianaAT5G57160.171.862257.9984glycine_maxKRH1233072.396758.4298
AT5G57160arabidopsis_thalianaAT5G57160.137.899928.3019glycine_maxKRH3733763.461547.3901
AT5G57160arabidopsis_thalianaAT5G57160.171.45258.6546corymbia_citriodoracds-KAF8033684.175.021561.5848
AT5G57160arabidopsis_thalianaAT5G57160.168.662853.2404aegilops_tauschiiAET2Gv20953400.1066.113751.2638
AT5G57160arabidopsis_thalianaAT5G57160.162.428247.9081oryza_longistaminataKN540031.1_FGP00362.633748.0658
AT5G57160arabidopsis_thalianaAT5G57160.127.235423.2978fraxinus_excelsiorFRAEX38873_v2_000298360.1.cds81.173669.4377
AT5G57160arabidopsis_thalianaAT5G57160.154.470938.2281fraxinus_excelsiorFRAEX38873_v2_000288150.1.cds55.287338.801
AT5G57160arabidopsis_thalianaAT5G57160.168.416751.5997avena_sativa_sangAVESA.00010b.r2.2CG0317030.1.CDS67.585150.9724
AT5G57160arabidopsis_thalianaAT5G57160.168.170651.3536avena_sativa_sangAVESA.00010b.r2.2AG0238190.1.CDS67.34250.7293
AT5G57160arabidopsis_thalianaAT5G57160.168.170651.3536avena_sativa_sangAVESA.00010b.r2.2DG0365250.1.CDS67.34250.7293
AT5G57160arabidopsis_thalianaAT5G57160.168.416752.42musa_acuminataMa01_p18780.472.207855.3247
AT5G57160arabidopsis_thalianaAT5G57160.168.006651.8458oryza_glaberrimaORGLA04G0210200.169.025852.6228
AT5G57160arabidopsis_thalianaAT5G57160.168.826953.4044hordeum_vulgareHORVU.MOREX.r3.2HG0192610.167.880352.6699
AT5G57160arabidopsis_thalianaAT5G57160.168.744953.4044triticum_turgidumTRITD2Av1G250540.767.799452.6699
AT5G57160arabidopsis_thalianaAT5G57160.166.69451.7637triticum_turgidumTRITD2Bv1G212650.169.250453.7479
AT5G57160arabidopsis_thalianaAT5G57160.169.975453.8146panicum_halliiPUZ4878469.91853.7705
AT5G57160arabidopsis_thalianaAT5G57160.168.826953.6505echinochloa_crusgalliscaffold14.352.cds68.601853.4751
AT5G57160arabidopsis_thalianaAT5G57160.168.744953.1583echinochloa_crusgalliscaffold49.82.cds68.576153.0278
AT5G57160arabidopsis_thalianaAT5G57160.163.658749.3027echinochloa_crusgalliscaffold94.412.cds41.386732.0533
AT5G57160arabidopsis_thalianaAT5G57160.167.432354.799actinidia_chinensisPSR8520773.458459.6962
AT5G57160arabidopsis_thalianaAT5G57160.173.584961.0336citrus_clementinaESR6648077.394364.1933
AT5G57160arabidopsis_thalianaAT5G57160.170.139553.4044oryza_indicaBGIOSGA014394-PA64.674749.2436
AT5G57160arabidopsis_thalianaAT5G57160.156.439739.3765selaginella_moellendorffiiEFJ2495158.753240.9906
AT5G57160arabidopsis_thalianaAT5G57160.156.931938.8843selaginella_moellendorffiiEFJ1540059.21540.4437
AT5G57160arabidopsis_thalianaAT5G57160.129.778517.7194homo_sapiensENSP0000040203039.846323.7102
AT5G57160arabidopsis_thalianaAT5G57160.159.47546.1854triticum_aestivumTraesCS2B02G453300.168.850953.4663
AT5G57160arabidopsis_thalianaAT5G57160.168.580853.2404triticum_aestivumTraesCS2D02G429800.167.692352.5506
AT5G57160arabidopsis_thalianaAT5G57160.168.744953.4044triticum_aestivumTraesCS2A02G431800.167.909252.7553
AT5G57160arabidopsis_thalianaAT5G57160.167.022149.959oryza_rufipogonORUFI04G26210.163.629347.4299
AT5G57160arabidopsis_thalianaAT5G57160.168.662853.2404secale_cerealeSECCE2Rv1G0119430.168.215252.8932
AT5G57160arabidopsis_thalianaAT5G57160.173.256859.8031gossypium_raimondiiKJB8335773.740760.1982
AT5G57160arabidopsis_thalianaAT5G57160.171.123957.9984helianthus_annuusmRNA:HanXRQr2_Chr05g020171175.98661.9632
AT5G57160arabidopsis_thalianaAT5G57160.166.119849.7949oryza_punctataOPUNC04G21990.262.968847.4219
AT5G57160arabidopsis_thalianaAT5G57160.168.908953.4865eragrostis_tefEt_7A_052117.CDS69.306953.7954
AT5G57160arabidopsis_thalianaAT5G57160.168.908953.1583eragrostis_tefEt_7B_054769.CDS69.306953.4653
AT5G57160arabidopsis_thalianaAT5G57160.161.115751.2715medicago_truncatulaAES6532784.371570.7814
AT5G57160arabidopsis_thalianaAT5G57160.131.337221.2469saccharum_spontaneumSspon.05G0031190-2D-mRNA-1:cds54.41636.8946
AT5G57160arabidopsis_thalianaAT5G57160.115.832710.1723saccharum_spontaneumSspon.05G0031180-1C-mRNA-1:cds64.765141.6107
AT5G57160arabidopsis_thalianaAT5G57160.169.647353.4865sorghum_bicolorOQU8226466.276350.8977
AT5G57160arabidopsis_thalianaAT5G57160.149.548837.1616triticum_dicoccoidesTRIDC2BG066100.264.806948.6051
AT5G57160arabidopsis_thalianaAT5G57160.135.438924.8564triticum_dicoccoidesTRIDC2AG062230.1256.470639.6078
AT5G57160arabidopsis_thalianaAT5G57160.170.959857.178coffea_canephoraCDP1578474.697860.19
AT5G57160arabidopsis_thalianaAT5G57160.142.247732.5677manihot_esculentaOAY3200568.302452.6525
AT5G57160arabidopsis_thalianaAT5G57160.162.428252.5841kalanchoe_fedtschenkoiKaladp0001s0308.1.v1.170.856659.6834
AT5G57160arabidopsis_thalianaAT5G57160.172.026357.4241trifolium_pratenseTp57577_TGAC_v2_mRNA783453.471442.6309
AT5G57160arabidopsis_thalianaAT5G57160.189.007484.2494brassica_rapa_ro18A10p020530.1_BraROA.189.966885.1575
AT5G57160arabidopsis_thalianaAT5G57160.142.165732.8138eucalyptus_grandisKCW7864666.8452.0156
AT5G57160arabidopsis_thalianaAT5G57160.167.268252.2559dioscorea_rotundataDRNTG_05142.172.056255.9754
AT5G57160arabidopsis_thalianaAT5G57160.173.174759.475prunus_persicaONI2721976.698262.3388
AT5G57160arabidopsis_thalianaAT5G57160.168.006651.1895avena_sativa_ot3098cds.AVESA.00001b.r3.2Ag0002011.1364.917848.8645
AT5G57160arabidopsis_thalianaAT5G57160.168.170651.3536avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0001934.1165.433149.2913
AT5G57160arabidopsis_thalianaAT5G57160.168.252751.4356avena_sativa_ot3098cds.AVESA.00001b.r3.2Cg0002695.967.42350.8104
AT5G57160arabidopsis_thalianaAT5G57160.165.053348.7285chenopodium_quinoaAUR62000175-RA:cds66.193749.5826
AT5G57160arabidopsis_thalianaAT5G57160.165.873749.959digitaria_exilisDexi7A01G0018150.1:cds67.252951.005
AT5G57160arabidopsis_thalianaAT5G57160.166.201850.1231digitaria_exilisDexi7B01G0018800.1:cds67.587951.1725
AT5G57160arabidopsis_thalianaAT5G57160.166.858150.3692oryza_barthiiOBART04G24540.165.043949.0024
AT5G57160arabidopsis_thalianaAT5G57160.189.089484.2494brassica_oleraceaBo9g130900.189.456384.5964
AT5G57160arabidopsis_thalianaAT5G57160.173.338859.3929prunus_dulcisVVA2825974.37660.2329
AT5G57160arabidopsis_thalianaAT5G57160.125.922914.0279galdieria_sulphurariaEME2868534.611218.7295
AT5G57160arabidopsis_thalianaAT5G57160.169.647352.6661leersia_perrieriLPERR04G20120.163.500448.018
AT5G57160arabidopsis_thalianaAT5G57160.172.928658.5726olea_europaeaOE9A106201C170.443756.5769
AT5G57160arabidopsis_thalianaAT5G57160.124.856414.0279saccharomyces_cerevisiaeYOR005C32.097518.1144
AT5G57160arabidopsis_thalianaAT5G57160.172.928661.5258pistacia_veracds-EVM0014835.176.178264.2673
AT5G57160arabidopsis_thalianaAT5G57160.18.449557.21903pistacia_veracds-EVM0017778.183.739871.5447
AT5G57160arabidopsis_thalianaAT5G57160.125.102513.8638drosophila_melanogasterFBpp007367833.333318.4096
AT5G57160arabidopsis_thalianaAT5G57160.189.581684.5775brassica_napusCDY3827190.472285.4184
AT5G57160arabidopsis_thalianaAT5G57160.187.940983.265brassica_napusCDY5273790.387985.5818
AT5G57160arabidopsis_thalianaAT5G57160.172.846660.5414corchorus_capsularisOMO7709373.754261.2957
AT5G57160arabidopsis_thalianaAT5G57160.161.115747.2518oryza_meridionalisOMERI04G20250.163.404349.0213
AT5G57160arabidopsis_thalianaAT5G57160.192.206788.5152camelina_sativaCsa11g090720.183.074679.7487
AT5G57160arabidopsis_thalianaAT5G57160.193.355289.4176camelina_sativaCsa18g030130.193.739789.7858
AT5G57160arabidopsis_thalianaAT5G57160.193.109189.4176camelina_sativaCsa02g061610.190.150986.5766
AT5G57160arabidopsis_thalianaAT5G57160.145.857335.3568malus_domestica_goldenmRNA:MD16G021170068.004952.4331
AT5G57160arabidopsis_thalianaAT5G57160.152.255943.9705daucus_carotaKZM9248882.51369.4301
AT5G57160arabidopsis_thalianaAT5G57160.172.518559.2289rosa_chinensisPRQ3714474.788561.0829
AT5G57160arabidopsis_thalianaAT5G57160.163.904850.4512nymphaea_colorataNC11G0016340.1:cds65.572451.7677
AT5G57160arabidopsis_thalianaAT5G57160.157.2645.0369vigna_angularisKOM3986470.150855.1759
AT5G57160arabidopsis_thalianaAT5G57160.166.858151.1075setaria_italicaKQK9880768.776452.5738
AT5G57160arabidopsis_thalianaAT5G57160.160.213343.3142physcomitrium_patensPp3c14_5920V3.256.635840.7407
AT5G57160arabidopsis_thalianaAT5G57160.147.251836.9975vitis_viniferaVitvi11g01148_P00169.064854.0767
AT5G57160arabidopsis_thalianaAT5G57160.167.022156.3577cynara_cardunculusKVI1181775.16163.2015

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000723NOT involved_in telomere maintenance1IMPArabidopsis_thaliana(3702)Process
GO:0003677enables DNA binding1IEAArabidopsis_thaliana(3702)Function
GO:0003910enables DNA ligase (ATP) activity2IDA,IEAArabidopsis_thaliana(3702)Function
GO:0005515enables protein binding1IPIArabidopsis_thaliana(3702)Function
GO:0005524enables ATP binding1IEAArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus1ISMArabidopsis_thaliana(3702)Component
GO:0006302acts_upstream_of_or_within double-strand break repair1IMPArabidopsis_thaliana(3702)Process
GO:0006303acts_upstream_of_or_within double-strand break repair via nonhomologous end joining1IMPArabidopsis_thaliana(3702)Process
GO:0006974acts_upstream_of_or_within DNA damage response1IMPArabidopsis_thaliana(3702)Process
GO:0009506located_in plasmodesma1HDAArabidopsis_thaliana(3702)Component
GO:0010165acts_upstream_of_or_within response to X-ray1IMPArabidopsis_thaliana(3702)Process
GO:0015074NOT involved_in DNA integration1IMPArabidopsis_thaliana(3702)Process
GO:0051103involved_in DNA ligation involved in DNA repair1IEAArabidopsis_thaliana(3702)Process
GO:0071897involved_in DNA biosynthetic process1IEAArabidopsis_thaliana(3702)Process

Expression