Description

Ensembl ID AT5G44180 Gene ID 834441 Accession -
Symbol RLT2 Alias - Full Name Homeodomain-like transcriptional regulator
Status Confidence Length 7807 bases Strand Plus strand
Position 5 : 17782428 - 17790234 RNA binding domain HARE-HTH
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G44180 HARE-HTH PF05066 3.9e-18 1
AT5G44180 HARE-HTH PF05066 5.2e-18 2
AT5G44180 HARE-HTH PF05066 5.2e-18 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RLT2-203 AT5G44180 5224 1694aa AT5G44180

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G44180arabidopsis_thalianaAT1G28420.153.958940.0587arabidopsis_thalianaAT5G44180.154.309340.3188

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G44180arabidopsis_thalianaAT5G44180.147.697833.294marchantia_polymorphaPTQ4851942.548729.6998
AT5G44180arabidopsis_thalianaAT5G44180.156.729644.5691papaver_somniferumRZC5088762.769449.3142
AT5G44180arabidopsis_thalianaAT5G44180.156.670644.392papaver_somniferumRZC8062362.868449.2469
AT5G44180arabidopsis_thalianaAT5G44180.161.393247.6978cannabis_sativa_femalecds.evm.model.10.139760.712247.1687
AT5G44180arabidopsis_thalianaAT5G44180.142.325932.8808ficus_caricaFCD_00019942-RA:cds58.963845.8059
AT5G44180arabidopsis_thalianaAT5G44180.162.455750.7084theobroma_cacaoEOX9952359.404848.2313
AT5G44180arabidopsis_thalianaAT5G44180.161.747348.2881beta_vulgarisKMT0193957.283744.7974
AT5G44180arabidopsis_thalianaAT5G44180.162.455749.7639populus_trichocarpaPotri.007G135500.1.v4.159.438247.3596
AT5G44180arabidopsis_thalianaAT5G44180.162.573849.5868populus_trichocarpaPotri.017G016200.1.v4.159.954847.5113
AT5G44180arabidopsis_thalianaAT5G44180.159.622245.7497solanum_lycopersicumSolyc07g053610.3.156.677943.4905
AT5G44180arabidopsis_thalianaAT5G44180.158.677744.9823lactuca_sativacds-PLY89641.159.628145.7109
AT5G44180arabidopsis_thalianaAT5G44180.159.090945.6907eragrostis_curvulaTVU2031554.639742.2489
AT5G44180arabidopsis_thalianaAT5G44180.158.500644.3329amborella_trichopodaERN0657456.660942.9388
AT5G44180arabidopsis_thalianaAT5G44180.159.917446.3991asparagus_officinalisONK6891555.464542.9508
AT5G44180arabidopsis_thalianaAT5G44180.156.788742.68pisum_sativumPsat7g167560.1.cds55.446741.6715
AT5G44180arabidopsis_thalianaAT5G44180.159.858345.7497brachypodium_distachyonKQK0913454.959442.0054
AT5G44180arabidopsis_thalianaAT5G44180.159.799343.3294brachypodium_distachyonKQK0489654.550439.5261
AT5G44180arabidopsis_thalianaAT5G44180.163.04650.6493quercus_subercds-POE49603.161.168449.1409
AT5G44180arabidopsis_thalianaAT5G44180.159.976445.3955ananas_comosusAco021375.1.mrna154.56541.2997
AT5G44180arabidopsis_thalianaAT5G44180.192.089788.6659arabidopsis_lyratafgenesh2_kg.8__392__AT5G44180.192.636689.1924
AT5G44180arabidopsis_thalianaAT5G44180.164.462851.2987quercus_lobataQL08p040227:mrna59.704847.5123
AT5G44180arabidopsis_thalianaAT5G44180.158.146445.2184capsicum_annuumPHT7670357.234244.509
AT5G44180arabidopsis_thalianaAT5G44180.171.015465.2893eutrema_salsugineumESQ4458587.173980.1449
AT5G44180arabidopsis_thalianaAT5G44180.192.325989.0201arabidopsis_hallerig29131.t192.054188.7581
AT5G44180arabidopsis_thalianaAT5G44180.158.618744.392setaria_viridisTKW1598353.733840.6926
AT5G44180arabidopsis_thalianaAT5G44180.158.913843.8607setaria_viridisTKW2589754.033640.2274
AT5G44180arabidopsis_thalianaAT5G44180.160.212545.5136oryza_nivaraONIVA05G27640.154.986541.5633
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.451oryza_nivaraONIVA01G29520.153.887440.3753
AT5G44180arabidopsis_thalianaAT5G44180.159.681246.8123ipomoea_trilobaitb02g08070.t156.448944.2769
AT5G44180arabidopsis_thalianaAT5G44180.160.153545.4545oryza_glumipatulaOGLUM05G27370.155.081141.6216
AT5G44180arabidopsis_thalianaAT5G44180.159.20944.3329oryza_glumipatulaOGLUM01G29920.153.665140.1819
AT5G44180arabidopsis_thalianaAT5G44180.158.913843.2704zea_maysZm00001eb343660_P00154.209739.8153
AT5G44180arabidopsis_thalianaAT5G44180.158.795743.0933zea_maysZm00001eb295800_P00154.45639.9125
AT5G44180arabidopsis_thalianaAT5G44180.157.792243.6246zea_maysZm00001eb359990_P00154.268340.9645
AT5G44180arabidopsis_thalianaAT5G44180.113.16418.61865zea_maysZm00001eb157190_P00139.609225.9325
AT5G44180arabidopsis_thalianaAT5G44180.158.559644.51sesamum_indicumSIN_1019730.t54.356241.3151
AT5G44180arabidopsis_thalianaAT5G44180.159.681244.3329lolium_perennecds.KYUSt_chr3.2671653.407339.6725
AT5G44180arabidopsis_thalianaAT5G44180.159.504144.2739lolium_perennecds.KYUSt_chr1.3977854.427640.4968
AT5G44180arabidopsis_thalianaAT5G44180.146.458129.4569chara_brauniiGBG7398914.15988.97805
AT5G44180arabidopsis_thalianaAT5G44180.179.515972.5502brassica_junceacds.BjuB02g51050S81.095773.9916
AT5G44180arabidopsis_thalianaAT5G44180.178.689572.0189brassica_junceacds.BjuA06g01560S80.984274.1191
AT5G44180arabidopsis_thalianaAT5G44180.158.382544.0378oryza_brachyanthaOB01G35260.155.344241.7459
AT5G44180arabidopsis_thalianaAT5G44180.158.972844.2739oryza_brachyanthaOB01G35240.151.230838.4615
AT5G44180arabidopsis_thalianaAT5G44180.159.149945.3955glycine_maxKRH5589156.260543.178
AT5G44180arabidopsis_thalianaAT5G44180.161.570248.5242corymbia_citriodoracds-KAF8008009.157.84845.5907
AT5G44180arabidopsis_thalianaAT5G44180.155.903242.4439aegilops_tauschiiAET1Gv20948900.1058.098244.1104
AT5G44180arabidopsis_thalianaAT5G44180.157.556142.4439aegilops_tauschiiAET3Gv20598900.353.778339.658
AT5G44180arabidopsis_thalianaAT5G44180.159.26843.9197triticum_urartuTuG1812G0100004332.01.T0154.007540.0215
AT5G44180arabidopsis_thalianaAT5G44180.159.031943.8607triticum_urartuTuG1812G0300002898.01.T0155.463141.2091
AT5G44180arabidopsis_thalianaAT5G44180.158.146443.6836oryza_longistaminataKN540044.1_FGP00353.590940.2612
AT5G44180arabidopsis_thalianaAT5G44180.156.316442.8571oryza_longistaminataKN539122.1_FGP00555.659342.3571
AT5G44180arabidopsis_thalianaAT5G44180.159.445146.3991fraxinus_excelsiorFRAEX38873_v2_000142130.1.cds56.604844.1821
AT5G44180arabidopsis_thalianaAT5G44180.158.736743.6836avena_sativa_sangAVESA.00010b.r2.1AG0036520.1.CDS54.017440.1737
AT5G44180arabidopsis_thalianaAT5G44180.158.854843.6836avena_sativa_sangAVESA.00010b.r2.1DG0155640.1.CDS54.125940.1737
AT5G44180arabidopsis_thalianaAT5G44180.160.153544.8052avena_sativa_sangAVESA.00010b.r2.3DG0543020.1.CDS55.350441.2276
AT5G44180arabidopsis_thalianaAT5G44180.157.969343.0342avena_sativa_sangAVESA.00010b.r2.1AG0004850.2.CDS54.074940.1432
AT5G44180arabidopsis_thalianaAT5G44180.152.597440.3778avena_sativa_sangAVESA.00010b.r2.3AG0442670.1.CDS58.695745.0593
AT5G44180arabidopsis_thalianaAT5G44180.160.035444.6281avena_sativa_sangAVESA.00010b.r2.3CG0495960.1.CDS54.64840.6233
AT5G44180arabidopsis_thalianaAT5G44180.159.445144.9823musa_acuminataMa09_p06430.156.100342.4513
AT5G44180arabidopsis_thalianaAT5G44180.159.445144.7462musa_acuminataMa06_p28710.155.238641.5798
AT5G44180arabidopsis_thalianaAT5G44180.161.865446.7532musa_acuminataMa08_p27840.157.049543.1138
AT5G44180arabidopsis_thalianaAT5G44180.160.271545.6316oryza_glaberrimaORGLA05G0222200.155.040441.6712
AT5G44180arabidopsis_thalianaAT5G44180.159.681244.0968hordeum_vulgareHORVU.MOREX.r3.3HG0279250.154.826540.5098
AT5G44180arabidopsis_thalianaAT5G44180.159.504144.51hordeum_vulgareHORVU.MOREX.r3.1HG0087450.154.281140.6031
AT5G44180arabidopsis_thalianaAT5G44180.159.26843.9197triticum_turgidumTRITD1Av1G212290.454.007540.0215
AT5G44180arabidopsis_thalianaAT5G44180.159.504144.0378triticum_turgidumTRITD1Bv1G212460.554.106340.0429
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.0378triticum_turgidumTRITD3Bv1G142600.354.324340.3243
AT5G44180arabidopsis_thalianaAT5G44180.159.445144.1558triticum_turgidumTRITD3Av1G164580.354.31540.3452
AT5G44180arabidopsis_thalianaAT5G44180.159.149944.1558panicum_halliiPUZ6480054.132940.4106
AT5G44180arabidopsis_thalianaAT5G44180.156.198341.7946echinochloa_crusgalliscaffold1.294.cds43.972332.7021
AT5G44180arabidopsis_thalianaAT5G44180.158.972844.0378echinochloa_crusgalliscaffold80.290.cds54.32340.5655
AT5G44180arabidopsis_thalianaAT5G44180.158.795744.7462echinochloa_crusgalliscaffold214.87.cds53.60640.7966
AT5G44180arabidopsis_thalianaAT5G44180.158.736744.451echinochloa_crusgalliscaffold15.117.cds53.783840.7027
AT5G44180arabidopsis_thalianaAT5G44180.159.149944.1558echinochloa_crusgalliscaffold13.942.cds44.952933.5576
AT5G44180arabidopsis_thalianaAT5G44180.158.559644.7462echinochloa_crusgalliscaffold113.207.cds53.563740.9287
AT5G44180arabidopsis_thalianaAT5G44180.162.750949.3507actinidia_chinensisPSS1643659.022846.4187
AT5G44180arabidopsis_thalianaAT5G44180.163.223149.5868actinidia_chinensisPSS0567859.335246.5374
AT5G44180arabidopsis_thalianaAT5G44180.159.799347.1665citrus_clementinaESR5994558.453546.105
AT5G44180arabidopsis_thalianaAT5G44180.151.77138.961oryza_indicaBGIOSGA004180-PA55.366241.6667
AT5G44180arabidopsis_thalianaAT5G44180.147.166536.0685oryza_indicaBGIOSGA017565-PA57.731244.1474
AT5G44180arabidopsis_thalianaAT5G44180.138.96125.6198selaginella_moellendorffiiEFJ1135344.147229.0301
AT5G44180arabidopsis_thalianaAT5G44180.147.874936.6588oryza_sativaOs05t0562400-0158.05344.4524
AT5G44180arabidopsis_thalianaAT5G44180.159.26843.9197triticum_aestivumTraesCS1A02G395600.154.007540.0215
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.0378triticum_aestivumTraesCS3B02G273900.154.324340.3243
AT5G44180arabidopsis_thalianaAT5G44180.159.445143.9787triticum_aestivumTraesCS1D02G403700.154.373640.2268
AT5G44180arabidopsis_thalianaAT5G44180.159.563244.2149triticum_aestivumTraesCS3D02G245800.254.393540.3774
AT5G44180arabidopsis_thalianaAT5G44180.159.445143.9787triticum_aestivumTraesCS1B02G424100.154.052639.9893
AT5G44180arabidopsis_thalianaAT5G44180.159.504144.2149triticum_aestivumTraesCS3A02G245700.254.368940.3991
AT5G44180arabidopsis_thalianaAT5G44180.159.20944.3329oryza_rufipogonORUFI01G29060.153.579140.1175
AT5G44180arabidopsis_thalianaAT5G44180.160.212545.5136oryza_rufipogonORUFI05G27630.154.986541.5633
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.1558secale_cerealeSECCE3Rv1G0183900.154.207140.3452
AT5G44180arabidopsis_thalianaAT5G44180.159.622244.1558secale_cerealeSECCE1Rv1G0056940.154.097540.0643
AT5G44180arabidopsis_thalianaAT5G44180.160.271547.4616gossypium_raimondiiKJB5013958.409645.9954
AT5G44180arabidopsis_thalianaAT5G44180.157.3243.4475helianthus_annuusmRNA:HanXRQr2_Chr17g081061159.717145.2645
AT5G44180arabidopsis_thalianaAT5G44180.157.3243.5065oryza_punctataOPUNC05G23340.154.889841.662
AT5G44180arabidopsis_thalianaAT5G44180.159.031944.392oryza_punctataOPUNC01G25990.154.141940.7147
AT5G44180arabidopsis_thalianaAT5G44180.154.427442.3849eragrostis_tefEt_9B_064915.CDS55.475343.201
AT5G44180arabidopsis_thalianaAT5G44180.154.958742.7981eragrostis_tefEt_9A_062367.CDS54.829242.6973
AT5G44180arabidopsis_thalianaAT5G44180.158.382544.451eragrostis_tefEt_3B_029010.CDS53.546340.7688
AT5G44180arabidopsis_thalianaAT5G44180.154.073241.3813eragrostis_tefEt_3A_024622.CDS54.009441.3325
AT5G44180arabidopsis_thalianaAT5G44180.157.37943.1523medicago_truncatulaAES8971155.133341.4634
AT5G44180arabidopsis_thalianaAT5G44180.149.586838.4298saccharum_spontaneumSspon.03G0009280-1A-mRNA-1:cds56.603843.8679
AT5G44180arabidopsis_thalianaAT5G44180.141.086231.2869saccharum_spontaneumSspon.03G0040980-1C-mRNA-1:cds62.032147.2371
AT5G44180arabidopsis_thalianaAT5G44180.113.51838.61865sorghum_bicolorOQU7564639.68825.3033
AT5G44180arabidopsis_thalianaAT5G44180.158.087443.9787sorghum_bicolorKXG3308353.97740.8667
AT5G44180arabidopsis_thalianaAT5G44180.158.500644.451sorghum_bicolorKXG3308153.800240.8795
AT5G44180arabidopsis_thalianaAT5G44180.152.538438.902triticum_dicoccoidesTRIDC1BG067120.456.472141.8147
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.1558triticum_dicoccoidesTRIDC3AG036810.355.159241.0538
AT5G44180arabidopsis_thalianaAT5G44180.159.26844.0378triticum_dicoccoidesTRIDC3BG041070.154.654340.6097
AT5G44180arabidopsis_thalianaAT5G44180.158.146443.1523triticum_dicoccoidesTRIDC1AG058170.454.031840.0987
AT5G44180arabidopsis_thalianaAT5G44180.158.559645.3365coffea_canephoraCDP1587455.605443.0493
AT5G44180arabidopsis_thalianaAT5G44180.162.632850.9445manihot_esculentaOAY3399959.74148.5923
AT5G44180arabidopsis_thalianaAT5G44180.160.507745.9268kalanchoe_fedtschenkoiKaladp0053s0276.1.v1.158.238644.2045
AT5G44180arabidopsis_thalianaAT5G44180.177.213770.6021brassica_rapa_ro18A06p056280.1_BraROA.181.495374.5171
AT5G44180arabidopsis_thalianaAT5G44180.161.15747.9339eucalyptus_grandisKCW4726157.459845.0361
AT5G44180arabidopsis_thalianaAT5G44180.160.035445.8678dioscorea_rotundataDRNTG_11572.154.472441.6176
AT5G44180arabidopsis_thalianaAT5G44180.159.031944.451dioscorea_rotundataDRNTG_01149.154.914941.3509
AT5G44180arabidopsis_thalianaAT5G44180.158.500643.2704avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0003519.153.917339.8803
AT5G44180arabidopsis_thalianaAT5G44180.154.840640.6139avena_sativa_ot3098cds.AVESA.00001b.r3.1Dg0002030.254.582840.423
AT5G44180arabidopsis_thalianaAT5G44180.160.035444.7462avena_sativa_ot3098cds.AVESA.00001b.r3.3Ag0001821.354.153440.3621
AT5G44180arabidopsis_thalianaAT5G44180.158.677743.5655avena_sativa_ot3098cds.AVESA.00001b.r3.1Ag0002003.253.933840.0434
AT5G44180arabidopsis_thalianaAT5G44180.160.035444.6281avena_sativa_ot3098cds.AVESA.00001b.r3.3Cg0002062.154.64840.6233
AT5G44180arabidopsis_thalianaAT5G44180.160.153544.8052avena_sativa_ot3098cds.AVESA.00001b.r3.3Dg0001373.155.350441.2276
AT5G44180arabidopsis_thalianaAT5G44180.157.556144.451chenopodium_quinoaAUR62036057-RA:cds57.624144.5035
AT5G44180arabidopsis_thalianaAT5G44180.159.976446.5762chenopodium_quinoaAUR62038987-RA:cds56.538743.9065
AT5G44180arabidopsis_thalianaAT5G44180.155.017742.2078digitaria_exilisDexi5A01G0022880.1:cds55.24642.3829
AT5G44180arabidopsis_thalianaAT5G44180.139.020130.2243digitaria_exilisDexi3A01G0016500.1:cds61.034247.2761
AT5G44180arabidopsis_thalianaAT5G44180.144.155833.7072digitaria_exilisDexi5B01G0023140.1:cds56.156242.8679
AT5G44180arabidopsis_thalianaAT5G44180.138.311729.3388digitaria_exilisDexi3B01G0016810.1:cds58.415844.7345
AT5G44180arabidopsis_thalianaAT5G44180.158.854844.1558oryza_barthiiOBART01G26120.151.604638.7164
AT5G44180arabidopsis_thalianaAT5G44180.160.271545.6316oryza_barthiiOBART05G25730.155.040441.6712
AT5G44180arabidopsis_thalianaAT5G44180.178.217271.7237brassica_oleraceaBo7g067190.179.627473.0168
AT5G44180arabidopsis_thalianaAT5G44180.155.785145.0413corylus_avellanaCav05g07570.t155.785145.0413
AT5G44180arabidopsis_thalianaAT5G44180.159.740345.2184leersia_perrieriLPERR05G21380.154.791641.4727
AT5G44180arabidopsis_thalianaAT5G44180.153.305840.2597leersia_perrieriLPERR01G22320.254.52941.1836
AT5G44180arabidopsis_thalianaAT5G44180.159.090945.6907olea_europaeaOE9A115481C556.267643.5076
AT5G44180arabidopsis_thalianaAT5G44180.161.983548.8194pistacia_veracds-EVM0017395.159.897347.1763
AT5G44180arabidopsis_thalianaAT5G44180.177.390870.366brassica_napusCDY2230579.987872.7273
AT5G44180arabidopsis_thalianaAT5G44180.178.217271.5466brassica_napusCDX9476079.531872.7491
AT5G44180arabidopsis_thalianaAT5G44180.159.32744.51oryza_meridionalisOMERI01G23740.154.353740.7788
AT5G44180arabidopsis_thalianaAT5G44180.187.131181.0508camelina_sativaCsa18g009600.186.619780.5751
AT5G44180arabidopsis_thalianaAT5G44180.187.603382.1133camelina_sativaCsa11g070510.187.089281.6315
AT5G44180arabidopsis_thalianaAT5G44180.187.839482.5856camelina_sativaCsa20g071210.187.426682.1974
AT5G44180arabidopsis_thalianaAT5G44180.145.336535.9504rosa_chinensisPRQ4989958.314446.2415
AT5G44180arabidopsis_thalianaAT5G44180.160.389648.0519juglans_regiacds.Jr01_21760_p160.784348.366
AT5G44180arabidopsis_thalianaAT5G44180.163.04650.2952juglans_regiacds.Jr01_21740_p160.33948.1356
AT5G44180arabidopsis_thalianaAT5G44180.156.670645.3955juglans_regiacds.Jr01_21750_p161.538549.2949
AT5G44180arabidopsis_thalianaAT5G44180.158.795744.7462nymphaea_colorataNC1G0181200.1:cds42.894132.6443
AT5G44180arabidopsis_thalianaAT5G44180.158.854843.8607setaria_italicaKQL1433253.979440.2274
AT5G44180arabidopsis_thalianaAT5G44180.152.538439.8465setaria_italicaKQL0635155.417242.0299
AT5G44180arabidopsis_thalianaAT5G44180.15034.0614physcomitrium_patensPp3c16_15110V3.146.360231.5818
AT5G44180arabidopsis_thalianaAT5G44180.150.177134.2975physcomitrium_patensPp3c16_15118V3.246.498931.7834
AT5G44180arabidopsis_thalianaAT5G44180.163.164150vitis_viniferaVitvi12g00258_P00360.349747.7721
AT5G44180arabidopsis_thalianaAT5G44180.149.114537.6033cynara_cardunculusKVI0427757.339843.9008

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000976enables transcription cis-regulatory region binding1IPIArabidopsis_thaliana(3702)Function
GO:0003700enables DNA-binding transcription factor activity1ISSArabidopsis_thaliana(3702)Function
GO:0005515enables protein binding1IPIArabidopsis_thaliana(3702)Function
GO:0005634located_in nucleus2IDA,ISMArabidopsis_thaliana(3702)Component
GO:0006357involved_in regulation of transcription by RNA polymerase II1IEAArabidopsis_thaliana(3702)Process
GO:0010228acts_upstream_of_or_within vegetative to reproductive phase transition of meristem1IGIArabidopsis_thaliana(3702)Process
GO:0031010part_of ISWI-type complex1IDAArabidopsis_thaliana(3702)Component
GO:0045892involved_in negative regulation of DNA-templated transcription1IMPArabidopsis_thaliana(3702)Process

Expression