RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	AT5G24360	Gene ID	832507	Accession	-
Symbol	IRE1-1	Alias	-	Full Name	inositol requiring 1-1
Status	Confidence	Length	3594 bases	Strand	Plus strand
Position	5 : 8316388 - 8319981	RNA binding domain	Ribonuc_2-5A
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
AT5G24360	Ribonuc_2-5A	PF06479	2.4e-43	1
AT5G24360	Ribonuc_2-5A	PF06479	2.5e-43	2
AT5G24360	Ribonuc_2-5A	PF06479	4.8e-43	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
IRE1-1-201	AT5G24360	3039	881aa	AT5G24360

Gene Model

Click here to download AT5G24360's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download AT5G24360's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT5G24360	arabidopsis_thaliana	AT2G17520.1	56.8371	40.4281	arabidopsis_thaliana	AT5G24360.2	53.8895	38.3315
AT5G24360	arabidopsis_thaliana	AT3G11870.1	53.4296	35.5596	arabidopsis_thaliana	AT5G24360.2	33.3709	22.2097

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
AT5G24360	arabidopsis_thaliana	AT5G24360.2	35.4002	21.3078	chondrus_crispus	CDF40078	31.1817	18.7686
AT5G24360	arabidopsis_thaliana	AT5G24360.2	42.5028	27.5085	chlamydomonas_reinhardtii	PNW79895	23.6068	15.2786
AT5G24360	arabidopsis_thaliana	AT5G24360.2	46.336	30.6652	marchantia_polymorpha	PTQ42860	47.079	31.1569
AT5G24360	arabidopsis_thaliana	AT5G24360.2	38.5569	22.9989	caenorhabditis_elegans	C41C4.4a.1	35.3671	21.0962
AT5G24360	arabidopsis_thaliana	AT5G24360.2	29.0868	19.6167	ostreococcus_lucimarinus	ABO94381	56.4551	38.0744
AT5G24360	arabidopsis_thaliana	AT5G24360.2	44.9831	31.1161	eragrostis_curvula	TVU39365	45.3409	31.3636
AT5G24360	arabidopsis_thaliana	AT5G24360.2	45.434	33.8219	asparagus_officinalis	ONK71058	53.7333	40
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.9346	brachypodium_distachyon	KQK16335	48.991	33.7444
AT5G24360	arabidopsis_thaliana	AT5G24360.2	51.1838	35.2875	ananas_comosus	Aco015782.1.mrna1	46.9493	32.3681
AT5G24360	arabidopsis_thaliana	AT5G24360.2	91.2063	88.0496	arabidopsis_lyrata	fgenesh2_kg.6__2434__AT5G24360.1	92.8817	89.667
AT5G24360	arabidopsis_thaliana	AT5G24360.2	80.1578	74.4081	eutrema_salsugineum	ESQ31980	92.3377	85.7143
AT5G24360	arabidopsis_thaliana	AT5G24360.2	93.1229	90.0789	arabidopsis_halleri	g25309.t1	93.018	89.9775
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.8309	34.0474	setaria_viridis	TKW34674	47.1215	32.1962
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.7091	oryza_nivara	ONIVA07G11900.1	48.9362	33.4826
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	33.8219	oryza_glumipatula	OGLUM07G12930.1	48.8839	33.4821
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.0564	34.2728	zea_mays	Zm00001eb104810_P001	48.9526	33.5171
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.4927	33.8219	zea_mays	Zm00001eb320100_P001	47.4595	32.4324
AT5G24360	arabidopsis_thaliana	AT5G24360.2	44.9831	31.7926	lolium_perenne	cds.KYUSt_chr2.25948	51.5504	36.4341
AT5G24360	arabidopsis_thaliana	AT5G24360.2	44.6449	29.1995	chara_braunii	GBG67137	39.7192	25.9779
AT5G24360	arabidopsis_thaliana	AT5G24360.2	86.0203	77.2266	arabis_alpina	KFK27714	86.9021	78.0182
AT5G24360	arabidopsis_thaliana	AT5G24360.2	14.8816	8.79369	ciona_savignyi	ENSCSAVP00000018541	44.1472	26.087
AT5G24360	arabidopsis_thaliana	AT5G24360.2	20.0676	19.053	brassica_juncea	cds.BjuA05g11940S	92.228	87.5648
AT5G24360	arabidopsis_thaliana	AT5G24360.2	83.2018	74.0699	brassica_juncea	cds.BjuB02g65840S	75.3061	67.0408
AT5G24360	arabidopsis_thaliana	AT5G24360.2	40.1353	29.5378	oryza_brachyantha	OB07G19930.1	57.5121	42.3263
AT5G24360	arabidopsis_thaliana	AT5G24360.2	39.1206	22.9989	cyanidioschyzon_merolae	CMM326CT	27.4525	16.1392
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.4927	34.9493	aegilops_tauschii	AET6Gv20921300.1	46.7519	33.0138
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	34.8365	triticum_urartu	TuG1812G0600004016.01.T04	49.4904	34.9943
AT5G24360	arabidopsis_thaliana	AT5G24360.2	46.8997	32.5817	oryza_longistaminata	KN538907.1_FGP004	50.7317	35.2439
AT5G24360	arabidopsis_thaliana	AT5G24360.2	41.1499	30.2142	avena_sativa_sang	AVESA.00010b.r2.2AG0201530.1.CDS	59.9343	44.0066
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.929	34.3856	avena_sativa_sang	AVESA.00010b.r2.2CG0278940.1.CDS	48.9842	34.4244
AT5G24360	arabidopsis_thaliana	AT5G24360.2	41.8264	30.4397	avena_sativa_sang	AVESA.00010b.r2.2DG0346810.1.CDS	50	36.3881
AT5G24360	arabidopsis_thaliana	AT5G24360.2	35.9639	27.283	musa_acuminata	Ma03_p30230.1	72.5	55
AT5G24360	arabidopsis_thaliana	AT5G24360.2	52.5366	36.4149	musa_acuminata	Ma03_p30430.1	46.9758	32.5605
AT5G24360	arabidopsis_thaliana	AT5G24360.2	52.1984	37.3168	musa_acuminata	Ma09_p22090.2	47.8306	34.1942
AT5G24360	arabidopsis_thaliana	AT5G24360.2	16.9109	11.274	musa_acuminata	Ma03_p30240.3	41.0959	27.3973
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.8219	oryza_glaberrima	ORGLA07G0117300.1	48.9362	33.5946
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.4927	34.611	hordeum_vulgare	HORVU.MOREX.r3.6HG0627300.1	49.8297	34.8468
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	34.8365	triticum_turgidum	TRITD6Bv1G213900.2	49.6599	35.034
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.1545	34.7238	triticum_turgidum	TRITD6Av1G215350.4	44.6721	31.5574
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.3946	34.2728	panicum_hallii	PUZ71985	47.8587	32.5482
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.3946	34.2728	echinochloa_crusgalli	scaffold27.143.cds	47.4522	32.2718
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.7035	33.8219	echinochloa_crusgalli	scaffold43.205.cds	49.5982	34.4432
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.6201	34.611	echinochloa_crusgalli	scaffold16.773.cds	47.7152	32.6249
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.7091	oryza_indica	BGIOSGA025667-PA	48.9362	33.4826
AT5G24360	arabidopsis_thaliana	AT5G24360.2	21.4205	15.8963	selaginella_moellendorffii	EFJ19390	73.0769	54.2308
AT5G24360	arabidopsis_thaliana	AT5G24360.2	20.7441	15.4453	selaginella_moellendorffii	EFJ21158	72.7273	54.1502
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	33.8219	oryza_sativa	Os07t0471000-01	49.0482	33.5946
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	34.7238	triticum_aestivum	TraesCS6B02G412400.1	49.5465	34.9206
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.4927	34.9493	triticum_aestivum	TraesCS6D02G358600.1	49.5485	34.9887
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.1545	34.7238	triticum_aestivum	TraesCS6A02G374700.1	49.3771	34.8811
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	33.8219	oryza_rufipogon	ORUFI07G14030.1	49.0482	33.5946
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.4927	34.8365	secale_cereale	SECCE6Rv1G0419750.1	49.4927	34.8365
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.1545	33.8219	oryza_punctata	OPUNC07G12490.1	48.6607	33.4821
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.7182	33.7091	eragrostis_tef	Et_5B_043496.CDS	40.7956	27.6596
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	33.5964	eragrostis_tef	Et_5A_040810.CDS	48.2379	32.8194
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.0564	34.1601	saccharum_spontaneum	Sspon.02G0007840-3C-mRNA-1:cds	47.8964	32.6861
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.0564	34.1601	saccharum_spontaneum	Sspon.02G0007840-2B-mRNA-1:cds	47.7419	32.5806
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.9436	34.1601	saccharum_spontaneum	Sspon.02G0007840-1T-mRNA-1:cds	47.5832	32.5457
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.9436	34.1601	saccharum_spontaneum	Sspon.02G0007840-1A-mRNA-1:cds	47.5832	32.5457
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.0564	34.2728	saccharum_spontaneum	Sspon.02G0007840-4D-mRNA-1:cds	48.0519	32.9004
AT5G24360	arabidopsis_thaliana	AT5G24360.2	50.3946	34.1601	sorghum_bicolor	EER97196	48.429	32.8277
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.8162	34.611	triticum_dicoccoides	TRIDC6BG065420.9	48.9819	34.7285
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.3653	34.3856	triticum_dicoccoides	TRIDC6AG055930.2	51.8742	36.8803
AT5G24360	arabidopsis_thaliana	AT5G24360.2	83.3145	74.4081	brassica_rapa_ro18	A06p042810.1_BraROA.1	87.3522	78.0142
AT5G24360	arabidopsis_thaliana	AT5G24360.2	52.9876	37.0913	dioscorea_rotundata	DRNTG_26578.1	49.5258	34.6681
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.3799	34.3856	avena_sativa_ot3098	cds.AVESA.00001b.r3.2Ag0000279.1	44.1978	30.777
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.929	34.3856	avena_sativa_ot3098	cds.AVESA.00001b.r3.2Cg0000885.3	46.0722	32.3779
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	34.3856	avena_sativa_ot3098	cds.AVESA.00001b.r3.2Dg0002855.1	49.3228	34.4244
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.7091	oryza_barthii	OBART07G13920.1	49.7156	34.0159
AT5G24360	arabidopsis_thaliana	AT5G24360.2	82.9763	74.7463	brassica_oleracea	Bo7g096940.1	86.5882	78
AT5G24360	arabidopsis_thaliana	AT5G24360.2	36.8658	21.0823	galdieria_sulphuraria	EME28059	35.6209	20.3704
AT5G24360	arabidopsis_thaliana	AT5G24360.2	48.2525	33.2582	leersia_perrieri	LPERR07G11640.1	47.5556	32.7778
AT5G24360	arabidopsis_thaliana	AT5G24360.2	44.3067	25.0282	saccharomyces_cerevisiae	YHR079C	35.2466	19.9103
AT5G24360	arabidopsis_thaliana	AT5G24360.2	38.7824	22.8861	drosophila_melanogaster	FBpp0112160	32.0298	18.9013
AT5G24360	arabidopsis_thaliana	AT5G24360.2	82.9763	74.7463	brassica_napus	CDX80437	86.5882	78
AT5G24360	arabidopsis_thaliana	AT5G24360.2	83.3145	74.4081	brassica_napus	CDX88098	87.3522	78.0142
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.2672	33.7091	oryza_meridionalis	OMERI06G02660.1	47.2432	32.3243
AT5G24360	arabidopsis_thaliana	AT5G24360.2	90.0789	85.2311	camelina_sativa	Csa08g018830.1	91.0023	86.1048
AT5G24360	arabidopsis_thaliana	AT5G24360.2	90.3044	85.1184	camelina_sativa	Csa20g040790.1	91.2301	85.9909
AT5G24360	arabidopsis_thaliana	AT5G24360.2	90.3044	84.6674	camelina_sativa	Csa13g029050.1	91.1263	85.438
AT5G24360	arabidopsis_thaliana	AT5G24360.2	52.8749	37.4295	nymphaea_colorata	NC2G0285290.1:cds	44.2453	31.3208
AT5G24360	arabidopsis_thaliana	AT5G24360.2	51.2965	35.513	nymphaea_colorata	NC9G0173320.1:cds	45.0049	31.1573
AT5G24360	arabidopsis_thaliana	AT5G24360.2	49.6054	33.8219	setaria_italica	KQL25738	46.9083	31.9829
AT5G24360	arabidopsis_thaliana	AT5G24360.2	47.8016	32.2435	physcomitrium_patens	Pp3c17_18370V3.3	45.5914	30.7527
AT5G24360	arabidopsis_thaliana	AT5G24360.2	47.8016	31.0034	physcomitrium_patens	Pp3c14_20430V3.4	45.8874	29.7619

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000394	acts_upstream_of_or_within RNA splicing, via endonucleolytic cleavage and ligation	1	IDA	Arabidopsis_thaliana(3702)	Process
GO:0004521	enables RNA endonuclease activity	2	IDA,IEA	Arabidopsis_thaliana(3702)	Function
GO:0004674	enables protein serine/threonine kinase activity	1	IEA	Arabidopsis_thaliana(3702)	Function
GO:0005783	located_in endoplasmic reticulum	1	IDA	Arabidopsis_thaliana(3702)	Component
GO:0006397	involved_in mRNA processing	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0006468	involved_in protein phosphorylation	1	IEA	Arabidopsis_thaliana(3702)	Process
GO:0008380	involved_in RNA splicing	1	IMP	Arabidopsis_thaliana(3702)	Process
GO:0009751	involved_in response to salicylic acid	1	IMP	Arabidopsis_thaliana(3702)	Process
GO:0030968	involved_in endoplasmic reticulum unfolded protein response	2	IEA,IGI	Arabidopsis_thaliana(3702)	Process
GO:0034263	acts_upstream_of_or_within positive regulation of autophagy in response to ER overload	2	IMP	Arabidopsis_thaliana(3702)	Process
GO:0034976	acts_upstream_of_or_within response to endoplasmic reticulum stress	1	IEP	Arabidopsis_thaliana(3702)	Process
GO:0042742	involved_in defense response to bacterium	1	IMP	Arabidopsis_thaliana(3702)	Process

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression