Description

Ensembl ID AT5G22800 Gene ID 832343 Accession -
Symbol EMB1030 Alias - Full Name Alanyl-tRNA synthetase, class IIc
Status Confidence Length 4532 bases Strand Minus strand
Position 5 : 7615747 - 7620278 RNA binding domain tRNA-synt_2c , tRNA_SAD , DHHA1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
AT5G22800 DHHA1 PF02272 5.7e-23 1
AT5G22800 DHHA1 PF02272 6e-23 2
AT5G22800 tRNA_SAD PF07973 3.4e-18 3
AT5G22800 tRNA_SAD PF07973 3.4e-18 4
AT5G22800 tRNA-synt_2c PF01411 7.1e-197 5
AT5G22800 tRNA-synt_2c PF01411 7.5e-197 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
EMB1030-202 AT5G22800 3491 1003aa AT5G22800

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G22800arabidopsis_thalianaAT3G16565.338.062321.4533arabidopsis_thalianaAT5G22800.210.96716.18146
AT5G22800arabidopsis_thalianaAT1G50200.249.653831.1573arabidopsis_thalianaAT5G22800.250.049931.4058

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
AT5G22800arabidopsis_thalianaAT5G22800.257.726844.0678chondrus_crispusCDF3463166.936451.0983
AT5G22800arabidopsis_thalianaAT5G22800.263.01150.8475chlamydomonas_reinhardtiiPNW7984366.596453.7408
AT5G22800arabidopsis_thalianaAT5G22800.271.186457.4277marchantia_polymorphaPTQ3619373.532459.3203
AT5G22800arabidopsis_thalianaAT5G22800.221.036918.5444papaver_somniferumRZC4855979.924270.4545
AT5G22800arabidopsis_thalianaAT5G22800.283.250373.1805cannabis_sativa_femalecds.evm.model.01.81260.419753.1114
AT5G22800arabidopsis_thalianaAT5G22800.284.047973.5793ficus_caricaFCD_00007135-RA:cds84.131773.6527
AT5G22800arabidopsis_thalianaAT5G22800.281.455671.4855ficus_caricaFCD_00000009-RA:cds83.880973.614
AT5G22800arabidopsis_thalianaAT5G22800.281.854470.3888theobroma_cacaoEOX9751182.182270.6707
AT5G22800arabidopsis_thalianaAT5G22800.280.458669.4915beta_vulgarisKMT0128582.012270.8333
AT5G22800arabidopsis_thalianaAT5G22800.270.388861.5155cucumis_meloMELO3C013645.2.186.625875.7055
AT5G22800arabidopsis_thalianaAT5G22800.28.474585.78265cucumis_sativusKGN4671547.48632.4022
AT5G22800arabidopsis_thalianaAT5G22800.275.274264.8056cucumis_sativusKGN4671784.357572.6257
AT5G22800arabidopsis_thalianaAT5G22800.282.552372.5823populus_trichocarpaPotri.009G141300.6.v4.182.965972.9459
AT5G22800arabidopsis_thalianaAT5G22800.279.860467.4975solanum_lycopersicumSolyc01g111990.3.181.15568.5917
AT5G22800arabidopsis_thalianaAT5G22800.277.268265.2044lactuca_sativacds-PLY67821.175.389163.6187
AT5G22800arabidopsis_thalianaAT5G22800.263.409849.4516ostreococcus_lucimarinusABO9720670.198754.7461
AT5G22800arabidopsis_thalianaAT5G22800.25.882354.28714eragrostis_curvulaTVU1184364.835247.2527
AT5G22800arabidopsis_thalianaAT5G22800.280.65869.8903citrullus_lanatusCla97C02G036830.180.970.1
AT5G22800arabidopsis_thalianaAT5G22800.277.866466.6999vigna_radiataVradi05g15810.181.694669.9791
AT5G22800arabidopsis_thalianaAT5G22800.276.570364.6062amborella_trichopodaERN1837177.732865.587
AT5G22800arabidopsis_thalianaAT5G22800.280.558368.7936vigna_unguiculataVigun09g277900.3.v1.279.060767.5147
AT5G22800arabidopsis_thalianaAT5G22800.281.056869.7906prunus_aviumPav_sc0000244.1_g030.1.mk:mrna84.336172.6141
AT5G22800arabidopsis_thalianaAT5G22800.279.361967.996phaseolus_vulgarisESW0930781.473969.8055
AT5G22800arabidopsis_thalianaAT5G22800.272.981158.9232phaseolus_vulgarisESW1627156.221245.3917
AT5G22800arabidopsis_thalianaAT5G22800.27.477576.08175asparagus_officinalisONK6589771.428658.0952
AT5G22800arabidopsis_thalianaAT5G22800.262.213451.2463pisum_sativumPsat5g000880.1.cds77.227763.6139
AT5G22800arabidopsis_thalianaAT5G22800.221.236318.1456pisum_sativumPsat5g000840.1.cds85.542273.0924
AT5G22800arabidopsis_thalianaAT5G22800.276.869464.4068brachypodium_distachyonKQK1875579.402766.5294
AT5G22800arabidopsis_thalianaAT5G22800.281.754771.7846quercus_subercds-POE95210.149.878343.7956
AT5G22800arabidopsis_thalianaAT5G22800.278.464667.6969ananas_comosusAco002940.1.mrna180.388269.3565
AT5G22800arabidopsis_thalianaAT5G22800.293.020990.8275arabidopsis_lyratascaffold_602336.195.398893.1493
AT5G22800arabidopsis_thalianaAT5G22800.282.552372.7817quercus_lobataQL11p055386:mrna82.965973.1463
AT5G22800arabidopsis_thalianaAT5G22800.281.854472.0837quercus_lobataQL11p055697:mrna82.34772.5176
AT5G22800arabidopsis_thalianaAT5G22800.241.774732.9013capsicum_annuumPHT6595080.268263.2184
AT5G22800arabidopsis_thalianaAT5G22800.212.46269.27218capsicum_annuumPHT8339565.789548.9474
AT5G22800arabidopsis_thalianaAT5G22800.278.963167.0987capsicum_annuumPHT6259780.324568.2556
AT5G22800arabidopsis_thalianaAT5G22800.280.059868.2951lupinus_angustifoliusOIV9628281.771969.7556
AT5G22800arabidopsis_thalianaAT5G22800.291.625187.5374eutrema_salsugineumESQ4224194.159889.959
AT5G22800arabidopsis_thalianaAT5G22800.291.126688.9332arabidopsis_hallerig27105.t194.61792.3395
AT5G22800arabidopsis_thalianaAT5G22800.235.892334.1974arabidopsis_hallerig25416.t189.775685.5362
AT5G22800arabidopsis_thalianaAT5G22800.273.778763.9083cajanus_cajanC.cajan_33932.t86.046574.5349
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.5005setaria_viridisTKW2072679.352267.5101
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.3011oryza_nivaraONIVA06G10690.378.714966.7671
AT5G22800arabidopsis_thalianaAT5G22800.278.464666.1017ipomoea_trilobaitb10g25890.t276.780564.6829
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.5005oryza_glumipatulaOGLUM06G09830.378.714966.9679
AT5G22800arabidopsis_thalianaAT5G22800.277.168565.005zea_maysZm00001eb371640_P00176.633764.5545
AT5G22800arabidopsis_thalianaAT5G22800.279.162567.7966sesamum_indicumSIN_1014603.t80.527468.9655
AT5G22800arabidopsis_thalianaAT5G22800.276.6764.2074lolium_perennecds.KYUSt_chr7.3224079.196766.3234
AT5G22800arabidopsis_thalianaAT5G22800.263.908352.5424chara_brauniiGBG6284526.1121.4664
AT5G22800arabidopsis_thalianaAT5G22800.291.126687.2383arabis_alpinaKFK2761793.839889.8357
AT5G22800arabidopsis_thalianaAT5G22800.288.733883.9482brassica_junceacds.BjuA02g33930S91.847386.8937
AT5G22800arabidopsis_thalianaAT5G22800.277.567365.6032oryza_brachyanthaOB06G18540.181.041768.5417
AT5G22800arabidopsis_thalianaAT5G22800.279.162568.3948glycine_maxKRH5133881.020470
AT5G22800arabidopsis_thalianaAT5G22800.279.262267.8963glycine_maxKRH6064282.554570.7165
AT5G22800arabidopsis_thalianaAT5G22800.262.213443.669cyanidioschyzon_merolaeCMG111CT60.523842.483
AT5G22800arabidopsis_thalianaAT5G22800.281.156571.4855corymbia_citriodoracds-KAF8013171.182.639672.7919
AT5G22800arabidopsis_thalianaAT5G22800.276.769764.9053aegilops_tauschiiAET7Gv20502300.479.545567.2521
AT5G22800arabidopsis_thalianaAT5G22800.277.367965.2044triticum_urartuTuG1812G0700002530.01.T0179.183766.7347
AT5G22800arabidopsis_thalianaAT5G22800.278.564366.4008oryza_longistaminataKN539129.1_FGP00377.865665.8103
AT5G22800arabidopsis_thalianaAT5G22800.280.458668.993fraxinus_excelsiorFRAEX38873_v2_000123580.1.cds81.187169.6177
AT5G22800arabidopsis_thalianaAT5G22800.276.869464.6062avena_sativa_sangAVESA.00010b.r2.UnG1403290.1.CDS79.402766.7353
AT5G22800arabidopsis_thalianaAT5G22800.276.570364.5065avena_sativa_sangAVESA.00010b.r2.7DG1396430.1.CDS79.093766.6323
AT5G22800arabidopsis_thalianaAT5G22800.276.869464.5065avena_sativa_sangAVESA.00010b.r2.7AG1211340.1.CDS79.402766.6323
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.8993musa_acuminataMa07_p12010.178.557167.2345
AT5G22800arabidopsis_thalianaAT5G22800.277.168565.7029oryza_glaberrimaORGLA06G0087500.183.047270.7082
AT5G22800arabidopsis_thalianaAT5G22800.277.068864.9053hordeum_vulgareHORVU.MOREX.r3.7HG0668470.178.797166.3609
AT5G22800arabidopsis_thalianaAT5G22800.275.67364.3071triticum_turgidumTRITD7Av1G067030.274.55863.3595
AT5G22800arabidopsis_thalianaAT5G22800.265.104755.334triticum_turgidumTRITD7Bv1G042780.182.76370.3422
AT5G22800arabidopsis_thalianaAT5G22800.277.866466.3011panicum_halliiPUZ6156679.048667.3077
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.5005echinochloa_crusgalliscaffold30.129.cds79.352267.5101
AT5G22800arabidopsis_thalianaAT5G22800.277.766766.002echinochloa_crusgalliscaffold44.360.cds79.027467.0719
AT5G22800arabidopsis_thalianaAT5G22800.277.467666.2014echinochloa_crusgalliscaffold249.4.cds78.643767.2065
AT5G22800arabidopsis_thalianaAT5G22800.282.65271.0867actinidia_chinensisPSS2179782.817271.2288
AT5G22800arabidopsis_thalianaAT5G22800.268.693960.0199citrus_clementinaESR3574982.613972.1823
AT5G22800arabidopsis_thalianaAT5G22800.278.065866.2014oryza_indicaBGIOSGA022618-PA78.614566.6667
AT5G22800arabidopsis_thalianaAT5G22800.271.186455.9322selaginella_moellendorffiiEFJ1648376.445460.0642
AT5G22800arabidopsis_thalianaAT5G22800.270.189455.5334selaginella_moellendorffiiEFJ0559376.521760.5435
AT5G22800arabidopsis_thalianaAT5G22800.218.644115.7527oryza_sativaOs06t0245800-0165.384655.2448
AT5G22800arabidopsis_thalianaAT5G22800.241.774726.6201homo_sapiensENSP0000024457142.538127.1066
AT5G22800arabidopsis_thalianaAT5G22800.277.168565.5035triticum_aestivumTraesCS7B02G103200.179.547867.5231
AT5G22800arabidopsis_thalianaAT5G22800.277.168565.005triticum_aestivumTraesCS7A02G237000.178.979666.5306
AT5G22800arabidopsis_thalianaAT5G22800.277.367965.2044triticum_aestivumTraesCS7D02G199300.179.022466.5988
AT5G22800arabidopsis_thalianaAT5G22800.277.467665.8026oryza_rufipogonORUFI06G09460.280.601768.4647
AT5G22800arabidopsis_thalianaAT5G22800.277.367965.2044secale_cerealeSECCE4Rv1G0250550.179.022466.5988
AT5G22800arabidopsis_thalianaAT5G22800.281.555369.3918gossypium_raimondiiKJB3272181.881969.6697
AT5G22800arabidopsis_thalianaAT5G22800.279.960167.4975helianthus_annuusmRNA:HanXRQr2_Chr17g081215182.765769.8658
AT5G22800arabidopsis_thalianaAT5G22800.278.364965.9023oryza_punctataOPUNC06G08850.479.154166.566
AT5G22800arabidopsis_thalianaAT5G22800.278.564366.4008eragrostis_tefEt_2A_017814.CDS79.918967.5456
AT5G22800arabidopsis_thalianaAT5G22800.278.364966.6999eragrostis_tefEt_2B_021821.CDS79.71667.8499
AT5G22800arabidopsis_thalianaAT5G22800.279.361967.0987medicago_truncatulaAES7434081.224568.6735
AT5G22800arabidopsis_thalianaAT5G22800.277.966166.6999saccharum_spontaneumSspon.08G0010810-3C-mRNA-1:cds78.989967.5758
AT5G22800arabidopsis_thalianaAT5G22800.277.866466.2014sorghum_bicolorKXG1970279.048667.2065
AT5G22800arabidopsis_thalianaAT5G22800.277.268264.9053triticum_dicoccoidesTRIDC7AG024750.278.520865.9574
AT5G22800arabidopsis_thalianaAT5G22800.277.268265.4038triticum_dicoccoidesTRIDC7BG015260.276.884965.0794
AT5G22800arabidopsis_thalianaAT5G22800.280.957168.8933coffea_canephoraCDP1452181.937469.7275
AT5G22800arabidopsis_thalianaAT5G22800.282.65273.5793manihot_esculentaOAY5224582.817273.7263
AT5G22800arabidopsis_thalianaAT5G22800.281.854469.99kalanchoe_fedtschenkoiKaladp0092s0047.1.v1.182.264570.3407
AT5G22800arabidopsis_thalianaAT5G22800.279.062866.7996trifolium_pratenseTp57577_TGAC_v2_mRNA3988480.835968.2977
AT5G22800arabidopsis_thalianaAT5G22800.284.047979.4616brassica_rapa_ro18A02p011370.1_BraROA.191.630486.6304
AT5G22800arabidopsis_thalianaAT5G22800.281.156571.3858eucalyptus_grandisKCW5562782.639672.6904
AT5G22800arabidopsis_thalianaAT5G22800.218.245314.656dioscorea_rotundataDRNTG_30724.183.561667.1233
AT5G22800arabidopsis_thalianaAT5G22800.245.66337.8863dioscorea_rotundataDRNTG_34298.179.101965.6304
AT5G22800arabidopsis_thalianaAT5G22800.214.855412.0638dioscorea_rotundataDRNTG_32472.164.224152.1552
AT5G22800arabidopsis_thalianaAT5G22800.282.452670.3888prunus_persicaONH9241382.617470.5295
AT5G22800arabidopsis_thalianaAT5G22800.277.068864.7059avena_sativa_ot3098cds.AVESA.00001b.r3.7Ag0001219.476.83964.5129
AT5G22800arabidopsis_thalianaAT5G22800.276.769764.7059avena_sativa_ot3098cds.AVESA.00001b.r3.7Dg0000228.476.769764.7059
AT5G22800arabidopsis_thalianaAT5G22800.276.869464.6062avena_sativa_ot3098cds.AVESA.00001b.r3.2Dg0000133.179.402766.7353
AT5G22800arabidopsis_thalianaAT5G22800.278.763768.4945chenopodium_quinoaAUR62012953-RA:cds84.042673.0851
AT5G22800arabidopsis_thalianaAT5G22800.277.866466.1017digitaria_exilisDexi4A01G0009960.1:cds78.413766.5663
AT5G22800arabidopsis_thalianaAT5G22800.277.068865.7029digitaria_exilisDexi4B01G0010310.1:cds79.038967.3824
AT5G22800arabidopsis_thalianaAT5G22800.278.065866.3011oryza_barthiiOBART06G09250.278.614566.7671
AT5G22800arabidopsis_thalianaAT5G22800.288.733883.7488brassica_oleraceaBo2g024420.191.847386.6873
AT5G22800arabidopsis_thalianaAT5G22800.282.253271.0867prunus_dulcisVVA3001182.417671.2288
AT5G22800arabidopsis_thalianaAT5G22800.282.65273.2802corylus_avellanaCav01g21240.t183.316673.8693
AT5G22800arabidopsis_thalianaAT5G22800.277.268265.9023leersia_perrieriLPERR06G08230.179.650667.9342
AT5G22800arabidopsis_thalianaAT5G22800.279.860467.996nicotiana_attenuataOIT0527880.827468.8194
AT5G22800arabidopsis_thalianaAT5G22800.280.957169.5912olea_europaeaOE9A032790C178.83567.767
AT5G22800arabidopsis_thalianaAT5G22800.282.253271.3858pistacia_veracds-EVM0015203.184.012272.9124
AT5G22800arabidopsis_thalianaAT5G22800.240.478624.9252drosophila_melanogasterFBpp007687140.118624.7036
AT5G22800arabidopsis_thalianaAT5G22800.289.032983.7488brassica_napusCDY5028592.156986.6873
AT5G22800arabidopsis_thalianaAT5G22800.289.132684.5464brassica_napusCDY0916892.260187.5129
AT5G22800arabidopsis_thalianaAT5G22800.281.954170.2891corchorus_capsularisOMO7999482.282370.5706
AT5G22800arabidopsis_thalianaAT5G22800.278.165566.3011oryza_meridionalisOMERI06G10790.279.032367.0363
AT5G22800arabidopsis_thalianaAT5G22800.290.528487.5374camelina_sativaCsa13g027360.195.478492.3239
AT5G22800arabidopsis_thalianaAT5G22800.282.253280.0598camelina_sativaCsa20g037580.183.756381.5228
AT5G22800arabidopsis_thalianaAT5G22800.292.622190.329camelina_sativaCsa09g011300.194.892792.5434
AT5G22800arabidopsis_thalianaAT5G22800.263.908356.6301camelina_sativaCsa20g038940.166.770859.1667
AT5G22800arabidopsis_thalianaAT5G22800.292.721889.8305camelina_sativaCsa06g006470.194.994992.0327
AT5G22800arabidopsis_thalianaAT5G22800.292.622190.1296camelina_sativaCsa04g012300.194.989892.4335
AT5G22800arabidopsis_thalianaAT5G22800.291.425788.335camelina_sativaCsa08g016110.193.762890.593
AT5G22800arabidopsis_thalianaAT5G22800.276.769765.1047malus_domestica_goldenmRNA:MD05G010800080.543968.3054
AT5G22800arabidopsis_thalianaAT5G22800.242.572336.8893malus_domestica_goldenmRNA:MD10G010970089.705977.7311
AT5G22800arabidopsis_thalianaAT5G22800.235.194429.7109malus_domestica_goldenmRNA:MD10G010960074.004262.4738
AT5G22800arabidopsis_thalianaAT5G22800.274.975163.9083malus_domestica_goldenmRNA:MD10G010980082.819470.5947
AT5G22800arabidopsis_thalianaAT5G22800.279.760768.2951daucus_carotaKZM8980285.929173.5768
AT5G22800arabidopsis_thalianaAT5G22800.282.65270.5882rosa_chinensisPRQ2508682.970.8
AT5G22800arabidopsis_thalianaAT5G22800.239.481633.1007rosa_chinensisPRQ2508782.157768.8797
AT5G22800arabidopsis_thalianaAT5G22800.282.452672.3829juglans_regiacds.Jr13_10160_p182.617472.5275
AT5G22800arabidopsis_thalianaAT5G22800.276.470663.011nymphaea_colorataNC8G0211860.1:cds75.715762.3889
AT5G22800arabidopsis_thalianaAT5G22800.278.065867.8963vigna_angularisKOM4238686.807175.4989
AT5G22800arabidopsis_thalianaAT5G22800.272.582362.3131setaria_italicaKQL1012984.651272.6744
AT5G22800arabidopsis_thalianaAT5G22800.273.280259.5214physcomitrium_patensPp3c2_4380V3.372.989159.285
AT5G22800arabidopsis_thalianaAT5G22800.282.352972.1834vitis_viniferaVitvi03g00210_P00182.107471.9682
AT5G22800arabidopsis_thalianaAT5G22800.267.098756.5304cynara_cardunculusKVI0403080.986868.231

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0004813enables alanine-tRNA ligase activity1IEAArabidopsis_thaliana(3702)Function
GO:0005739located_in mitochondrion1IDAArabidopsis_thaliana(3702)Component
GO:0009507located_in chloroplast3HDA,IDA,ISMArabidopsis_thaliana(3702)Component
GO:0009570located_in chloroplast stroma1HDAArabidopsis_thaliana(3702)Component
GO:0009793acts_upstream_of_or_within embryo development ending in seed dormancy1IMPArabidopsis_thaliana(3702)Process

Expression